BAC Information

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BAC

Clone NameMSMg01-424E12
Chromosome11 (Build37)
Map Location 74,745,131 - 74,918,027
singlet/doubletdoublet
Overlap geneSmg6, LOC100043429, LOC627835
Upstream geneOlfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478
Downstream geneHic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424E12.T7 (MSMg01no424_e12.b1)MSMg01-424E12.TJ (MSMg01no424_e12.g1)
ACCAG518239AG518240
length717779
length of high quality
(start - end)
557 (50 - 606)386 (79 - 464)
definitionCHROMAT_FILE: MSMg01no424_e12.b1 PHD_FILE: MSMg01no424_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:12 2005CHROMAT_FILE: MSMg01no424_e12.g1 PHD_FILE: MSMg01no424_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,917,638 - 74,918,027)(74,745,131 - 74,745,516)
sequence
NGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGCTCCCCTCTGAAGAGCAGCAAGCACTATTAACCACTGA
GCCATCTTTCTAGGCCTCACCTTTTTCTTTTGAGACTTGGCTAGATTAGC
AACCCCAGGGAGCTCCCTGCTTCCACTCCTCCATCTACAGTGGAATTACA
GGAGTCTACTGCTATACCCAGCTTTTACATGAGTGCCGAGACTCAAACTC
AGGTCCCCTTGTTTACACAACGAGCATTTTACCATCCAAGCCATCTCCCA
AACTCCAAAGATTTTCCTTTTATTTATTTATGTACATTTTTAAAGTGGGG
ATTACTGGGATAGAATTTAGGACCTCACATATGCTAGGCTCTACCACTGA
GCTACAGCCCCAACTCTCAAGTTTATATTTTTTCTAGGGAATGCAATCCC
AACTGAAATGTACAAATGTATATTTGATAGATTTCTGGGTTACTTAGGTA
CATGCACTATTAGAACTCAGCAAAGATACACTTAATATTTATGCATTTCT
TTGCAGTGTATTTTGCTCTAAACACTAAAAATACTGAATTCAACAAAACA
TGTGTACATGGAAGGATTAAGAAAAAGTATACTAAGCTTGGTATAATGGC
TCAGGTTTTTAGTTTAGCACTCCAGAGGCAGAGACAGGCAGATCTCTGTG
AGTTTTAGGCTAACCTA
CACGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGACAGTCAGAATGTAGATC
AGATCCTGTGGAAGAACGCTTTCTATCAGGTGATTGAGAAGTTCAGGCAG
CTTCTCAAGGATCCAAACAGTGAGAACCCAGAACAGATTCGGAACACACT
CTTGGAGCTCTTAGATGAGGTAAACATTATTATTATCATCATTATTGTTG
TTGTTATTGTTATATCCTCAGGATAAAGTCTGCAGCATCTTTTTGTTTGT
TTTTTCTACTGGAGATGTTATATAATATAATATTGCCAAAACCCTTCTAT
TTTTCTTGCATTTAGACCTGGTCTCCCTGTACTGCTTCCTTTGGACTATA
CTCACAGACAGCTGGAGTTAACTTTTTTTCCAGTGCTCAGCTACTGAGTT
ACATCTCCAGACCCAGAGTTACTTTTGACCTTGAAAGCTTTCTGAATGAT
AGGGGTGCTCGGCAGTGTTGTGGCGAATCCACCTTTTTCTTTATTTTTCT
TTTTTCTTCTTGTTTCAACTTCCTTTATTTCTCTAATCTTTTCTTATATT
ATATTTCTCACTTTAATAAATTCAATTTTCTCTCCCCTCACGTCATTTCC
CCCTTTATTTTTCTTTTTCTCCTTCCTTTTCCCGTTTCGTTTTACTTACC
TTCCTTCCTCCCTTTCATTTGTTTTTTCATTTTCGCCCTCCACCTCTGCC
CCACTCCCTTTTCTTTTTTCTCCTTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_e12.b1 MSMg01no424_e12.b1 CHROMAT_FILE:
MSMg01no424_e12.b1 PHD_FILE: MSMg01no424_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:12 2005
         (557 letters)



>mm_chr11_74917071_74918027
          Length = 957

 Score =  754 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Minus

                                                                       
Query: 168 cccagcttttacatgagtgccgagactcaaactcaggtccccttgtttacacaacgagca 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 cccagcttttacatgagtgccgagactcaaactcaggtccccttgtttacacaacgagca 898

                                                                       
Query: 228 ttttaccatccaagccatctcccaaactccaaagattttccttttatttatttatgtaca 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ttttaccatccaagccatctcccaaactccaaagattttccttttatttatttatgtaca 838

                                                                       
Query: 288 tttttaaagtggggattactgggatagaatttaggacctcacatatgctaggctctacca 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tttttaaagtggggattactgggatagaatttaggacctcacatatgctaggctctacca 778

                                                                       
Query: 348 ctgagctacagccccaactctcaagtttatattttttctagggaatgcaatcccaactga 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ctgagctacagccccaactctcaagtttatattttttctagggaatgcaatcccaactga 718

                                                                       
Query: 408 aatgtacaaatgtatatttgatagatttctgggttacttaggtacatgcactattagaac 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aatgtacaaatgtatatttgatagatttctgggttacttaggtacatgcactattagaac 658

                                                                       
Query: 468 tcagcaaagatacacttaatatttatgcatttctttgcagtgtattttgctctaaacact 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tcagcaaagatacacttaatatttatgcatttctttgcagtgtattttgctctaaacact 598

                                         
Query: 528 aaaaatactgaattcaacaaaacatgtgta 557
           ||||||||||||||||||||||||||||||
Sbjct: 597 aaaaatactgaattcaacaaaacatgtgta 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no424_e12.g1 MSMg01no424_e12.g1 CHROMAT_FILE:
MSMg01no424_e12.g1 PHD_FILE: MSMg01no424_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:12 2005
         (386 letters)



>mm_chr11_74744931_74745716
          Length = 786

 Score =  669 bits (346), Expect = 0.0
 Identities = 376/386 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgacagtcagaatgtagatcagatcctgtggaagaacgctttctatcaggtgattgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccgacagtcagaatgtagatcagatcctgtggaagaacgctttctatcaggtgattgag 260

                                                                       
Query: 61  aagttcaggcagcttctcaaggatccaaacagtgagaacccagaacagattcggaacaca 120
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 261 aagttcaggcagcttctcaaggatccaaacagtgagaacccagagcagattcggaacaga 320

                                                                       
Query: 121 ctcttggagctcttagatgaggtaaacattattattatcatcattattgttgttgttatt 180
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 321 ctcttggagctcttagatgaggtaagcattgttattatcatcattattgttgttgttatt 380

                                                                       
Query: 181 gttatatcctcaggataaagtctgcagcatctttttgtttgttttttctactggagatgt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttatagcctcaggataaagtctgcagcatctttttgtttgttttttctactggagatgt 440

                                                                       
Query: 241 tatataatataatattgccaaaacccttctatttttcttgcatttagacctggtctccct 300
           |||| || | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tatagaacagaatattgccaaaacccttctatttttcttgcatttagatctggtctccct 500

                                                                       
Query: 301 gtactgcttcctttggactatactcacagacagctggagttaactttttttccagtgctc 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtactgcttcctttggactatacacacagacagctggagttaactttttttccagtgctc 560

                                     
Query: 361 agctactgagttacatctccagaccc 386
           ||||||||||||||||||||||||||
Sbjct: 561 agctactgagttacatctccagaccc 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)