BAC Information

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BAC

Clone NameMSMg01-425H23
Chromosome11 (Build37)
Map Location 21,565,493 - 21,565,911
singlet/doubletsinglet
Overlap geneAV249152
Upstream geneAftph, 1110067D22Rik, LOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1
Downstream genePgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425H23.T7 (MSMg01no425_h23.b1)MSMg01-425H23.TJ (MSMg01no425_h23.g1)
ACCAG519166AG519167
length830755
length of high quality
(start - end)		---418 (66 - 483)
definitionCHROMAT_FILE: MSMg01no425_h23.b1 PHD_FILE: MSMg01no425_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:44 2005CHROMAT_FILE: MSMg01no425_h23.g1 PHD_FILE: MSMg01no425_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTCTTCTCCATTCCACTCTTTTTTTTTCTCAAATCCGCGGAATTC
ATTCTTGTATTCCCGTGTAGTGCAATTAACAATAAGCTCTACTCATATAC
CTATATTAGAATAATATAGATTAATGACTGTCTCTTTACTGTTGTTGTTT
TTGCTGTCCGATATTTGTTTCATAGTATATTCTTTTGATCTACTGTAACC
CATGTTGGCCTCAATTTGCTATGCATCTTATTATACTCTTGAATCATTTA
TCCTCTTTCCTCCACTGAATGATGATCCTCTTCCTGCACGCTGTTATGTT
ACCAATGTACCACCCCCTATTTTATACTTTTTACGATGCTCTTTATACAA
CCCACCTCCTTCTTTCCTTCTACGCCACCTATTTTACCCTTCTATTTCCT
TTTCTTTTATCTTTATCTTGAACTAACACTTTCATTATTATTCTAGATCC
TTTTTTTTCTTTTCCCCCGTCCCCTTACCCTCTGCTCTTCTTCTGTTTTT
CCTTTTCTCTCTTCTCTCTTCTTTTACCTCTCCTCTCTCTTTTCTTCTCA
TACTTCTTCTCCTTTCCTCCTCTTTCTCTTTCTTCTTCCCCTTCCTCTTC
TCTCTCCCCTCTCTTTTTTATCTCCCTAATCTTTTCACATATTCTTCTTA
CCTCCTTTCCTTTCCTCCTTTTCTGTTTTCTTTCACTCGCTTGTTACACA
CTTCCTCTATTCACTGTTTTTCTTCTCTTTTCTCCTCCTCTTAACTTTTT
ACGCTCTATTCTTTATCATCTCTCTCTTCTGTTGTCTTTCTCTCCCCTAT
GTTCTCTCTTTATCCTATCCTTCCTTCTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTAATGAAAGATTTCCTTTCTGTAACATGTGAGC
AACACAAAAACGTTGACATTAAATTAAAAAGCAATGAAATCTATCTAAAC
ATGATCATCTCCCTGGGATGCTCCACTGCATTTTTTAAAAGACCTGACAT
GTTCCAACTCACCAGGTGATGGTAAGGGTGGAGGCCATGAGGCACACCTC
TTAATGTAGGTGGGAGGCTTGCCCTCCAGTCAAATAATTTTGAGCCTGTT
TTTGCAGTGAGCAATGGCATTAGGAACTCCAAGTTTAAGCCGAACTGAGT
CTGAAACTTATTGGAGCACATCTGATATTCAAGCTTGAAGATCTCATCAC
ATATTTCTATGCAAATGACATTAAACAATGGCATCCTTTTGAAGAGTATT
CTAAGGAGAATTTAACAAGTGTTATAGTTCTGAAAATATCAGCCTTGTAA
ATAGTCTAGAAAGTANGAATTCATGCCAGATGACNAGGTAACAGTAAACC
TCCATTACTAAAGAGAGAACAGTTTAGACNAACNATGAAATGTTCTGAAG
AAAATTAANAATAACTAAAATAATAGNCTATGTTATGTTTGTAATTACTG
GGGATTTGAAGTTATAAGGTTATGGAAAAAAAAAGGGCGAAACCTAAAAC
AAGAAGGTCCCCCATTTTAAAAATGTATGGGAAAGGCAAAAAATAAATGA
AACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_h23.g1 MSMg01no425_h23.g1 CHROMAT_FILE:
MSMg01no425_h23.g1 PHD_FILE: MSMg01no425_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:44 2005
         (418 letters)



>mm_chr11_21565293_21566111
          Length = 819

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%), Gaps = 1/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaatgaaagatttcctttctgtaacatgtgagcaacacaaaaacgttgacattaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agtaatgaaagatttcctttctgtaacatgtgagcaacacaaaaacgttgacattaaatt 560

                                                                       
Query: 61  aaaaagcaatgaaatctatctaaacatgatcatctccctgggatgctccactgcattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaaaagcaatgaaatctatctaaacatgatcatctccctgggatgctccactgcattttt 500

                                                                       
Query: 121 taaaagacctgacatgttccaactcaccaggtgatggtaagggtggaggccatgaggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taaaagacctgacatgttccaactcaccaggtgatggtaagggtggaggccatgaggcac 440

                                                                       
Query: 181 acctcttaatgtaggtgggaggcttgccctccagtcaaataattttgagcctg-tttttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 acctcttaatgtaggtgggaggcttgccctccagtcaaataattttgagcctgttttttg 380

                                                                       
Query: 240 cagtgagcaatggcattaggaactccaagtttaagccgaactgagtctgaaacttattgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagtgagcaatggcattaggaactccaagtttaagccgaactgagtctgaaacttattgg 320

                                                                       
Query: 300 agcacatctgatattcaagcttgaagatctcatcacatatttctatgcaaatgacattaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agcacatctgatattcaagcttgaagatctcatcacatatttctatgcaaatgacattaa 260

                                                                      
Query: 360 acaatggcatccttttgaagagtattctaaggagaatttaacaagtgttatagttctga 418
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 259 acaatggcatccttttgaagagtattctaaggagaatttaacaggtgttatagttctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space:   331290
Effective search space used:   331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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