BAC Information

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BAC

Clone NameMSMg01-425J21
Chromosome11 (Build37)
Map Location 115,059,965 - 115,060,398
singlet/doubletsinglet
Overlap geneTmem104
Upstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9
Downstream geneGrin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425J21.T7 (MSMg01no425_j21.b1)MSMg01-425J21.TJ (MSMg01no425_j21.g1)
ACCAG519256AG519257
length767781
length of high quality
(start - end)		482 (35 - 516)434 (63 - 496)
definitionCHROMAT_FILE: MSMg01no425_j21.b1 PHD_FILE: MSMg01no425_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:53 2005CHROMAT_FILE: MSMg01no425_j21.g1 PHD_FILE: MSMg01no425_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCGNAGATCCGCGGAATTCACTCCT
ATTCACTGCCCATTCTCAGGGCGTAATAGTGGGGTGATGGGCAAGCAACA
AATCAGGAGCTGACACGCCATATCAGGTGTTGAAACACCATGGCTGAGGG
CTATATAAGTGACTCCATTTTCTGGGGTCGGGGTCTTCCTGAGAAGTGAG
CAATAAAGCTTTGCCGCAGAAGATTCCGGTTGTCCTGAGTGTGTTCTTGC
CGGCGGAGACAAAAGCTCGGGATAAGTGGCGCCTAGGAACCCGGGAACTA
CCATCACACCCGCGCTAGGGAGATCCCTTGTTAGCAGGGCAGAACCAGAA
CTGCGGGACACGTAAGGCTCTGCAAGGTACGCACAGTCTTGAAATTTCTC
CAGAATTAGACGCCCTTTTGATTGTTTGCACGGTGATTGCACTTTTCCTT
TCGGTTTCATTTTGCTTCCACCGCTGGAACTGCTGACTGGTTCCCAGTCA
CGGTCAGGCCTGGACAGTGCCTGGACAGCGACCAGTTTCAGTAGTGGTCA
GGCCTGGACAGCACCTGGACAGCGACCAGTTTCAGTCGTGGTCAAGATTG
TACAGTGGCAGTATGGGAACCCCCCATTCTGTAAAAACGGTGGTTCGGCC
CGTCCCTGAAACAAGGGGGGCCGCAAATCCCCCCCTATAAAAATTTAGGG
TATTTGTCCGGGGAAAAAAACGGGGGGCACCATGGGGATATCCCGGCCCC
CTAAATTCTTCCACACT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGAGCTGCCAGAGCATGAAGTACGTAATGAGCCAACA
GTACTCAGAGGTTCACCCCCAAGGTTCCCCAAAATAAGTGACTAAGAAAC
CGCAATTTTTGGGTGTGATCCCCTCCCATGAGCCTCTTCTGGGTCTGTTC
CCTTCAGCTTTTATCTCTGCTTCGTTCTCTCTAGGGTGCTCTTCTCCTCA
AGCCCCTGATGTGGTACAGCTCCATCTCGTACCCCCGAACCCCATGCTTC
AGCCCCTACACCTTTTCTCCCCACGCCCCCACACTCACAGGCTCTCACAC
CCCAGCTCCCCACGCCCCCATGCCTAGGGCCCTACTTAAACCTGCAGTCT
CCCCACCTCCCCAGCCCCTCTTTTTCTTTTATCACCTTGTAACTTGCTCT
CGCTTTATTCTGTGGAAAGCCCCTAACATGGAGGATGGTGTAGGAGAAGC
ACTGCCTCCCAGGGAGTTAGTCCTTGGAAGAGTCTCCCAAGTTTCCTACC
ACTTTTTTTTTTTTTTTTTTTTTTTGTGCCATGCATGTGGCGGGGACGGG
GTTGGCCTCTATAAGGTGGGTAAAACTGACCTTTCCGGTTCTATTTGTCC
TTTTCTTTTGTTCCAAAAGGGGTGGGAAAAATAGAGGGGGGCTTCCCCCC
CCGCTCTTTAATTTATATTTTTAAAATTAAATAATTTAGCGTTGAAGCCC
TATTATTGCCCCTTTTCTCTTCCCTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_j21.g1 MSMg01no425_j21.g1 CHROMAT_FILE:
MSMg01no425_j21.g1 PHD_FILE: MSMg01no425_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:53 2005
         (434 letters)



>mm_chr11_115059765_115060598
          Length = 834

 Score =  801 bits (414), Expect = 0.0
 Identities = 429/438 (97%), Gaps = 8/438 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagctgccagagcatgaagtacgtaatgagccaacagtactcagaggttcacccccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttgagctgccagagcatgaagtacgtaatgagccaacagtactcagaggttcacccccaa 575

                                                                       
Query: 61  ggttccccaaaataagtgactaagaaaccgcaatttttgggtgtgatcccctcccatgag 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 574 ggttccccaaaataagtgactaagaaaccgcaatctttgggtgtgatcccctcccatgag 515

                                                                       
Query: 121 cctcttctgggtctgttcccttcagcttttatctctgcttcgttctctctagggtgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cctcttctgggtctgttcccttcagcttttatctctgcttcgttctctctagggtgctct 455

                                                                       
Query: 181 tctcctcaagcccctgatgtggtacagctccatctcgtacccccgaaccccatgcttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctcctcaagcccctgatgtggtacagctccatctcgtacccccgaaccccatgcttcag 395

                                                                       
Query: 241 cccctacacc----ttttctccccacgcccccacactcacaggctctcacaccccagctc 296
           ||||||||||        ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cccctacaccccag----ctccccacgcccccacactcacaggctctcacaccccagctc 339

                                                                       
Query: 297 cccacgcccccatgcctagggccctacttaaacctgcagtctccccacctccccagcccc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cccacgcccccatgcctagggccctacttaaacctgcagtctccccacctccccagcccc 279

                                                                       
Query: 357 tctttttcttttatcaccttgtaacttgctctcgctttattctgtggaaagcccctaaca 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tctttttcttttatcaccttgtaacttgctctcgctttattctgtggaaagcccctaaca 219

                             
Query: 417 tggaggatggtgtaggag 434
           ||||||||||||||||||
Sbjct: 218 tggaggatggtgtaggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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