BAC Information

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BAC

Clone NameMSMg01-425K06
Chromosome11 (Build37)
Map Location 40,503,697 - 40,504,100
singlet/doubletsinglet
Overlap geneMat2b
Upstream geneLOC100039241, LOC382508, LOC432549
Downstream geneHmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285, Hspd1, LOC100039292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425K06.T7 (MSMg01no425_k06.b1)MSMg01-425K06.TJ (MSMg01no425_k06.g1)
ACCAG519274AG519275
length737874
length of high quality
(start - end)		427 (41 - 467)---
definitionCHROMAT_FILE: MSMg01no425_k06.b1 PHD_FILE: MSMg01no425_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:55 2005CHROMAT_FILE: MSMg01no425_k06.g1 PHD_FILE: MSMg01no425_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCC
ATTCCTATTACGCAATCTAGATATCTTGTTTCTTAAATCCCAAGGGTGTC
CAAGGATGGTAGAGAGTGAATGTGAAAACTTGAAAGTGTTGAAAGTGAAT
GTGAAACTTTCTGGTTGTTTTGTTTTTGTTTTCCCAGAAAGATCAGGGCT
GGTCTTGAATTCATTGAGACCCTCCTGCATCAGATGATTTTTTTTTTCAA
TTATGCATGATTGCTAAGTGTATAGCCGTGTACCATGTGTCTGATACCTA
CTAGGGCCAATAGAAGGTGTCTCTTTCCCGTAGAGCTGGAGTTACAGGGA
GGTGTGAGCTGCCCAGGATGGACTCTGAGGACCCAATGCCAGTCCTCTGC
AAGAGCAACTTTTTTTTTTTTTTTTTTTTTTTTTAGGTTTTTAAATGTTA
TGTGTGNTGGGTGTTTGNNCTGTATGTTTGTTCACCACATGCATGCATCA
CCCTTTGACGTCCACACACTATGTTGGCTCTCCCAAGGATATGTAGTCTT
TCTTATTGTTGACTCCTTGCCCTGTCAGTGTCGCAATTTAAACCTCGTAT
CTCACCCCTATTCGCCTTCCTCTTTTAAGTCTTTCCACAACTCTTCATGA
AATTTCTTTTTTTTTCTTCCGTACACAATTCTATCCCCTTCTCACTTTTC
TCTTTCCTATTCCTTTTCATTTTAATCTCTCTCCTTN

CTGTGTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCGCTATTCCACTACCTGTAAAGGTACTTAGTGACACCCTC
TCTCGAAAGAATTTATCACCGCGAACCGACCATGCGAACCGAACTTATGG
AAGTATTCCTCTTATTGACGCAACCGTTCCTCCCCTCCCCTTCTCTCCTC
CTCTCCCTCTCTTTCCCTCTCCTCTCCCTCTTCCTCTCCCTTTTCCCTTT
TTTCCCTTCTCTTTTCTTTCTTTTTCCCCTCTTTTCCCTTCCCTTTTTCC
TCCCCTTTTCTCCCTCCCCTCTCCNCCCCCTTTTTTTTTTTTTTTCTTCC
CCCTCCCCCCCCCCCCTCTTTTCCCCCTCTCCCTTTTCTCTCCCCCTCTT
CTCCTCCCCCCTCCTCTTTTTTCCCTTTTCTCCCCCCCCCCTCCTTTTCC
CCCCCCCTCTCCTTTTTCCCTTCCTCCCTCTCTCTCTCCCTCTCCTTCTC
TCTTTTCCCTTTCTCTCCCCCTCCCCTCCCCCTTTCTCCCCTCTTCCTCC
CCCCCCTTTCCCCCTCCTTTCCCTCCCTTCTTTTTTCCCCCCCTCCTCTT
TCCCCCCCCTTTNTCTCTCTCCCTCCTTTTTCCTCTCCCTCCTTTCTCCC
CTCCCCTCCCCCCTTCTTTTCCCACTCTTTTTTTCCTTTTTCCCCCCCCC
CTTTCTCTCCCTCCTTTTTCCCCCCTTCCTCCTTTTTCTCCTCTTCCCTT
TTCTTTTCTTTTCTCCCTTTCCCTCTTCTTCTTCCTTTCTCTCCTCCCCT
TTCCCCCTCTCTTCCTTTCCTTTTCCCCTTTCCCCTTTTCTTTCTTCCTT
CCTCCTCTCTCCTCCTTCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_k06.b1 MSMg01no425_k06.b1 CHROMAT_FILE:
MSMg01no425_k06.b1 PHD_FILE: MSMg01no425_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:55 2005
         (427 letters)



>mm_chr11_40503697_40504531
          Length = 835

 Score =  696 bits (360), Expect = 0.0
 Identities = 391/406 (96%), Gaps = 10/406 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccattcctattacgcaatctagatatcttgtttcttaaatcccaagggtgtccaa 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaattccattcctattaagcaatctagatatcttgtttcttaaatcccaagggtgtccaa 345

                                                                       
Query: 64  ggat--------ggtagagagtgaatgtgaaaacttgaaagtgttgaaagtgaatgtgaa 115
           ||||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggatgttagagaggtagagagtgaatgtgaaaacttgaaagtgttgaaagtgaatgtgaa 285

                                                                       
Query: 116 actttctggttgttttgtttttgttttcccagaaagatcagggctggtcttgaattcatt 175
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 284 actttctggttgttttgtatttgttttcccagacagatcagggctggtcttgaattcatt 225

                                                                       
Query: 176 gagaccctcctgcatcagatgattttttttttcaattatgcatgattgctaagtgtatag 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gagaccctcctgcatcagatgattttttttttcaattatgcatgattgctaagtgtatag 165

                                                                       
Query: 236 ccgtgtaccatgtgtctgatacctactagggccaatagaaggtgtctctttcccgtagag 295
           |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct: 164 ccgtgtaccatgtgtctgatacctactagggccaatagaaggtgtc-cattccagtagag 106

                                                                       
Query: 296 ctggagttacagggaggtgtgagctgcccaggatggactctgaggacccaatgccagtcc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ctggagttacagggaggtgtgagctgcccaggatggactctgaggacccaatgccagtcc 46

                                                         
Query: 356 tctgcaagagcaactttttttttttttttttttttttttaggtttt 401
           |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 45  tctgcaagagcaac-ttttttttttttttttttttttttaggtttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 835
Length adjustment: 9
Effective length of query: 418
Effective length of database: 826
Effective search space:   345268
Effective search space used:   345268
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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