Query= MSMg01no425_l11.b1 MSMg01no425_l11.b1 CHROMAT_FILE:
MSMg01no425_l11.b1 PHD_FILE: MSMg01no425_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:00 2005
(559 letters)
>mm_chr11_27406002_27406960
Length = 959
Score = 1065 bits (551), Expect = 0.0
Identities = 557/559 (99%)
Strand = Plus / Plus
Query: 1 tgacacaatccaggtccctcttattctcttagagcctaagataattattgtagctgtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacacaatccaggtccctcttattctcttagagcctaagataattattgtagctgtgga 260
Query: 61 tactctgaaacagacacatatcccactgctggtatttaaacaaaaacatattcatataac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactctgaaacagacacatatcccactgctggtatttaaacaaaaacatattcatataac 320
Query: 121 ataactgggttttaaaagaaaccaaaattttcattatagacagggtcatgcactaaagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataactgggttttaaaagaaaccaaaattttcattatagacagggtcatgcactaaagct 380
Query: 181 agagtttaattgattcagctatgctcaggactatgggtgtctctttcccacagacatggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagtttaattgattcagctatgctcaggactatgggtgtctctttcccacagacatggt 440
Query: 241 agtgttacaagaataaaccacttttatatctaagacatgtacaatattactctatgctaa 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 agtgttacaagaataaaccacttttatgtctaagacatgtacaatattactctatgctaa 500
Query: 301 aattattgttcttttataaaataaaaattaaccttcaaatttttgatgatgttcatttca 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 aattattgttcttttataaaataaaaattaatcttcaaatttttgatgatgttcatttca 560
Query: 361 gaacacatggtggctcaagtattaagtgcataagtagaaaatctaaataaaccatgtttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacacatggtggctcaagtattaagtgcataagtagaaaatctaaataaaccatgtttt 620
Query: 421 ttagttcaaaatacacttctttttttttttcagtatacaatcatgttttatttgaaaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagttcaaaatacacttctttttttttttcagtatacaatcatgttttatttgaaaaga 680
Query: 481 tgtctacgctgtattgaataccaacacaggtgatgaagatactacagctgtgtcccagca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtctacgctgtattgaataccaacacaggtgatgaagatactacagctgtgtcccagca 740
Query: 541 atactgagtaccaatggta 559
|||||||||||||||||||
Sbjct: 741 atactgagtaccaatggta 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_l11.g1 MSMg01no425_l11.g1 CHROMAT_FILE:
MSMg01no425_l11.g1 PHD_FILE: MSMg01no425_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:00 2005
(566 letters)
>mm_chr11_27592728_27593692
Length = 965
Score = 845 bits (437), Expect = 0.0
Identities = 513/569 (90%), Gaps = 49/569 (8%)
Strand = Plus / Minus
Query: 1 cagtagagaatttgaacttcaggagagagtcagaagaaggaagactcaccacatggactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cagtagagaatttgaacttcaggagagagtcagaagaaggaagactcaccacatggactc 492
Query: 61 aggggatctagaaatatgaaacaagtgagaagtaattagtgatgtgacacacatagaata 120
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 491 aggggatctagaaatatgaaacaagtgagaagtaattaatgatgtggcacacatagaata 432
Query: 121 gaataaacaggttacgtaagttatcagttagttggagaatgagccaaagtttgtggccta 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 431 gaataaacaggttatgtaagttatcagttagttggagaatgagccaaagtttgtggtcta 372
Query: 181 ggcatttattcataaatcattaagtcccagagtaattatttcaggacctgggacagggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggcatttattcataaatcattaagtcccagagtaattatttcaggacctgggacagggaa 312
Query: 241 ataaaaaaatgccagtggctaaaagagacagatcaaaagatgataaaattgtaaagaaaa 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 at-aaaaaatgccagtggctaaaagagacagatcaaaagatgataaaattgtaaagaaaa 253
Query: 301 agtttaaactatatccttctttgaaaatgtcatcaatctatccttttaacaacagaaata 360
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 agtttaaactatatccttatttgacaatgtcatcaatctatccttttaacaacagaaata 193
Query: 361 acaggaatgatgcaaatatgaactcacaaaaactatggcagcttataaaaaacccatatg 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 192 acaggaatgatgcaaatatgaactcacaaaaactatggcagcttatacaaaacccatatg 133
Query: 421 gatctagccagatggggttccaacactgaaagggaaaatagatacaaactagccacaatt 480
||||||||||||| ||
Sbjct: 132 gatctagccagat---------------------------------------------tt 118
Query: 481 aggccaacagtacatggtaaaccacaaaataatttcaatgttattttgctgtgatttttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 aggccaacagtacatggtaaaccacaaaataatttcaatgttattttgctgtgatttttt 58
Query: 541 t---attcataatgctctgttatgatgat 566
| |||||||||||||||||||||||||
Sbjct: 57 ttaaattcataatgctctgttatgatgat 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 965
Length adjustment: 10
Effective length of query: 556
Effective length of database: 955
Effective search space: 530980
Effective search space used: 530980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
