Query= MSMg01no425_n09.b1 MSMg01no425_n09.b1 CHROMAT_FILE:
MSMg01no425_n09.b1 PHD_FILE: MSMg01no425_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:10 2005
(315 letters)
>mm_chr11_77355260_77355974
Length = 715
Score = 563 bits (291), Expect = e-165
Identities = 308/315 (97%), Gaps = 4/315 (1%)
Strand = Plus / Minus
Query: 3 gaattcatgccttc--tgcgttattatattccaacaagctgacataggcccccatttcag 60
|||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 515 gaattcatgccttcaat--gttattatattccaacaagctaacataggcccccatttcag 458
Query: 61 caatggatcttacgttcaccatcactacatcttccacctcaggaaatttgtgttgataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caatggatcttacgttcaccatcactacatcttccacctcaggaaatttgtgttgataaa 398
Query: 121 atctacaacttagacccggcattctgaagtggatgtgtgaatcccgaagtagggtcccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atctacaacttagacccggcattctgaagtggatgtgtgaatcccgaagtagggtcccac 338
Query: 181 accgagctgcttagtggcaacgaggagactcttgtcagtgtttataactaccatatttaa 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 337 accgagctgcttagtggcaacgaagagactcttgtcagtgtttataactaccatatttaa 278
Query: 241 tttatgagatgaaatttaagtttgtgtcatgaatatttaccagatgcaaaaaatacctgt 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 277 tttatgagatgaaatttaagtttgtgtcatgaatatttgccagatgcaaaaaatacctgt 218
Query: 301 aattttatcatataa 315
|||||||||||||||
Sbjct: 217 aattttatcatataa 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_n09.g1 MSMg01no425_n09.g1 CHROMAT_FILE:
MSMg01no425_n09.g1 PHD_FILE: MSMg01no425_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:10 2005
(508 letters)
>mm_chr11_77163681_77164587
Length = 907
Score = 920 bits (476), Expect = 0.0
Identities = 500/508 (98%), Gaps = 2/508 (0%)
Strand = Plus / Plus
Query: 2 acaacagatctctcgccctttctccctgttctgtgtctcagtggtagattgtattgtgct 61
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaacagatctctcgccctttccccctgttctgtgtctcagtggtagattgtattgtgct 260
Query: 62 ggtagatccttagtagctccgaaga-atcatatagttagttaacactttgcaaaactgta 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtagatccttagtagctccgaagagatcatatagttagttaacactttgcaaaactgta 320
Query: 121 aatccctgcaacaaaagtgagctaactgaatttaataatagctaacagctgccacctatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatccctgcaacaaaagtgagctaactgaatttaataatagctaacagctgccacctatg 380
Query: 181 gcccgcttgtcactgtgctgagtttaatgtgtgttatctcacttagccatcacagtagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 381 gcccgcttgtcactgtgctgagtttaatgtgtgttatctcacttagccatcacgggagtc 440
Query: 241 ctgtgaattactttgttgtgtttacagtaatgagactggagctcaaagccacactaataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgaattactttgttgtgtttacagtaatgagactggagctcaaagccacactaataa 500
Query: 301 gtgacagaaactccttaagatccccatacagctttttaaatcactataaaaatggtattt 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gtgacagaaactccttaagatccccatccagctttttaaatcactataaaaatggtattt 560
Query: 361 tgtgtttgtaactgcagggtcacttttgagacccatagtaaagatctttgctgagtgatg 420
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 tgtgttagtaactgcagggtcacttttgagatccatagtaaagatctttgctgagtgatg 620
Query: 421 ctaaggtaggatgataaacttttaagcaatttttttggaataatctcttcctattttatt 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 ctaaggtaggatgataaacttttaagcaatttttt-ggaataatctcttcctattttatt 679
Query: 481 tctttaaagagagagtgcctagctacat 508
||||||||||||||||||||||||||||
Sbjct: 680 tctttaaagagagagtgcctagctacat 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space: 446706
Effective search space used: 446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
