Query= MSMg01no426_d08.b1 MSMg01no426_d08.b1 CHROMAT_FILE:
MSMg01no426_d08.b1 PHD_FILE: MSMg01no426_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:39 2005
(447 letters)
>mm_chr11_23665719_23666565
Length = 847
Score = 818 bits (423), Expect = 0.0
Identities = 438/445 (98%), Gaps = 4/445 (0%)
Strand = Plus / Minus
Query: 7 gaattcaaggccattctgctttataaagcaagttacaggccatccagaccatacaatgag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattcaaggccattctgctttataaagcaagttacaggccatccagaccatacaatgag 599
Query: 67 gctgtctcaaaaaaaaa----aataataataatccttttcctcaaaattttatattattt 122
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gctgtctcaaaaaaaaaaaacaataataataatccttttcctcaaaattttatattattt 539
Query: 123 tgaagttttagcatctctaaaatgaacagcagttctctttatgaagagtaaagttaagag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgaagttttagcatctctaaaatgaacagcagttctctttatgaagagtaaagttaagag 479
Query: 183 aatctgtgagaaatacctatgtgtgtgttttaattggtattataattaattatatgtaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aatctgtgagaaatacctatgtgtgtgttttaattggtattataattaattatatgtaac 419
Query: 243 atattctcattgtgtacttaattatggcttctcattctagtaataatatttttgttgata 302
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 418 atattctcattgtgtacttaattatggcttctcattctagcaatagtatttttgttgata 359
Query: 303 tacctattttatatataattgtggcaattgatctatttttaatgtttctaatgtaaaaga 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 358 tacctattttatatataattgtggcaattgatctatttttaatgtttctaatgtgaaaga 299
Query: 363 aatttctaattcctttttaatcttaaaatctaatttttaatttttttaatcttaaaactc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aatttctaattcctttttaatcttaaaatctaatttttaatttttttaatcttaaaactc 239
Query: 423 atacttgagattttaaataggctca 447
|||||||||||||||||||||||||
Sbjct: 238 atacttgagattttaaataggctca 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_d08.g1 MSMg01no426_d08.g1 CHROMAT_FILE:
MSMg01no426_d08.g1 PHD_FILE: MSMg01no426_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:39 2005
(481 letters)
>mm_chr11_23526665_23527545
Length = 881
Score = 758 bits (392), Expect = 0.0
Identities = 443/462 (95%), Gaps = 10/462 (2%)
Strand = Plus / Plus
Query: 1 accctaacctgggattaggaactgaacccactgtctgatgacagtactagctgagctact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctaacctgggattaggaactgaacccactgtctgatgacagtactagctgagctact 260
Query: 61 aagcaatacccctagccccaataaaatctaattccaacttttactggaaagcaaatccag 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcaatacccctagcctcaataaaatctaattccaacttttactggaaagcaaatccag 320
Query: 121 ggggatctgacttgtaacactatattttcttttcttctactgcatatctcaggctattgt 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ggggatctgacttgtaacactatattttcttttcttctattgcatatctcaggctattgt 380
Query: 181 tgtactaaggactgatcccagggcctcagacatactagggaagcactctacctatgaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtactaaggactgatcccagggcctcagacatactagggaagcactctacctatgaaga 440
Query: 241 tgccaaagctgccaaggaggccaccgaaggaagcaaaattgacagaaataaaactatctt 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccaaagctgccaaggaggcccccgaaggaagcaaaattgacagaaataaaactatctt 500
Query: 301 ggactagacaatgcctaatggtgaaggggaggccacagagttttcctagaaggcaggggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggactagacaatgcctaatggtgaaggggaggccacagagttttcctagaaggcaggggt 560
Query: 361 gataggctaccaaaaaaaaaaaaaagaaagaaagaaagaaagtagaaagaaagaaagaaa 420
||||||||||||||||||||||||| ||| ||| ||| ||| | ||| |||||||||||
Sbjct: 561 gataggctaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa--aaaaaaaaagaaagaaa 618
Query: 421 gaaagaaa-gaaa-gaaagaaagaaagaaagatagaaagaaa 460
|||||||| |||| |||| |||||| |||| | |||||||
Sbjct: 619 gaaagaaaagaaaagaaa--aagaaa--aaga-a-aaagaaa 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
