BAC Information

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BAC

Clone NameMSMg01-426E23
Chromosome11 (Build37)
Map Location 10,627,002 - 10,627,356
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665435, LOC382483
Downstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426E23.T7 (MSMg01no426_e23.b1)MSMg01-426E23.TJ (MSMg01no426_e23.g1)
ACCAG519782AG519783
length788822
length of high quality
(start - end)
414 (69 - 482)149 (76 - 224)
definitionCHROMAT_FILE: MSMg01no426_e23.b1 PHD_FILE: MSMg01no426_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:48 2005CHROMAT_FILE: MSMg01no426_e23.g1 PHD_FILE: MSMg01no426_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAAAATCTCTCCATTTATCCAAACAGCATTAATTCATGAAAGTT
TATCTTCATGTTGGTATGCAGGAAATTTGCCCAATAGAGTGAGATGATGC
CCAGGAATCATTAAGCTATATAATCACGACAGGAAATACATATCAGCAGC
AAGGAGCAATCTGGGATGAAGTCTCTAAGGATCATGCAGCCCAAAGCTCA
CCCATCACAGACCATAAAAAATGGTAGGCCATCTGCAGAAAATATATTGT
ATGCCTTAGTCTTTCCTAGATGGCTTCTGAAATAAGTGGAAGTAGGAAAA
AATCCCCCCTCATTTTTGTAGACACTACTCATCCAGTGCTTAGAAGACTG
GGCTAAGTGATGTCAGAGTTTTACAAAGTATGCACATTTAGGTAAATCTG
AATCCAAAGCTCTACCTGGATATAAAATGGTGTTGATATGATTGATGAAT
GAGTTCTTTTTTTTAAGAATTATTTATTTACTATATGGAAGGACACTGTA
NCTGTCTTCAGACACTACTACCTGAAGAGGGGGGCAGATCTCTCTAACGA
TGGAGGGGAACTACCCTGGGGGTGGCGGGATTTGGAATCCCGGAACTTTG
GGAAAAAAGCCAGGGTTCTTACCCGGTGAACAACCCCCCACCCCCGAGGA
AGGATCCTTTACCCCAAAAGAAATAAGGCCCAAAAAAGGCCCCATGGAAA
AATGTTTTCCCCGGTTTTAACCCAAACCCCTTCTTATG
GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACACAGGACTCTCATCAATAGACA
GATCATGGAAACACAAACTGAACAGAGACACATTGAAACTAACAGAACTT
AAGGACCAAATGAGATATGTGTATATATATATATATATATATATATATAT
ATATAGAGAGAGAGAGAGAGAGAGNGNGNGNGNGGGGGGGGGGGGGTGTG
GGNGNGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGTGTGTGTGTGTGTGGGTATATTTATAGAGAGAGAGGGGGGGGGGG
GGGGGGGGGGGCGCGCGCGGCGCACGCGAGTGTGGGGGAGAGAGAGACAC
AGAGACATACATACATACACCCCCTTGGCGCTTGGATGCCTGTTGCGTCC
AGGGACTTCCTCTTCATTTTGTACAGTCCTCTCTTTTCCTCGTTTTTGGC
TATATTCCCCCCATTTCCCTGCCATCTGCCTTCTCTCCCTCTTGGATCTT
CGCTCTCGTTGCTTCCTTTCCTCTTCTTTTCTTCGCCCCGTCTCGTCTCC
TCTATGCTTCTTCCTTCCCGTTCTCTTGCCGTTCTCTCCTGTTCGTTCGT
TTGTTCCGTTGTCGTCGTACGCGTTGTTTCCCCATTCCTGTTTCTATCTT
TCCTCTATCCCCTTACTCCCGACCTGCCCGGCACTTTCGTCCCCGCGCGC
TGCCTTCCACCGCCGCTCGTCTTCTGGTCTCGGCACTGACGGCCTGCTTT
CTCCGCTCTGTTCGTTCCGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_e23.b1 MSMg01no426_e23.b1 CHROMAT_FILE:
MSMg01no426_e23.b1 PHD_FILE: MSMg01no426_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:48 2005
         (414 letters)



>mm_chr11_10626541_10627356
          Length = 816

 Score =  644 bits (333), Expect = 0.0
 Identities = 349/355 (98%), Gaps = 2/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 62  cccaatagagtgagatgatgcccaggaatcattaagctatataatcacgacaggaaatac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 cccaatagagtgagatgatgcccaggaatcattaagctatataatcacgacaggaaatac 757

                                                                       
Query: 122 atatcagcagcaaggagcaatctgggatgaagtctctaaggatcatgcagcccaaagctc 181
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 756 atatcagcagcaaggagcaatctcggatgaagtctctaaggatcatgcagcccaaagctc 697

                                                                       
Query: 182 acccatcacagaccataaaaaatggtaggccatctgcagaaaatatattgtatgccttag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 acccatcacagaccataaaaaatggtaggccatctgcagaaaatatattgtatgccttag 637

                                                                       
Query: 242 tctttcctagatggcttctgaaataagtggaagtaggaaaaaat--cccccctcattttt 299
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| 
Sbjct: 636 tctttcctagatggcttctgaaataagtggaagtaggaaaaaatcccccccctcattttc 577

                                                                       
Query: 300 gtagacactactcatccagtgcttagaagactgggctaagtgatgtcagagttttacaaa 359
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gtagatactactcatccagtacttagaagactgggctaagtgatgtcagagttttacaaa 517

                                                                  
Query: 360 gtatgcacatttaggtaaatctgaatccaaagctctacctggatataaaatggtg 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtatgcacatttaggtaaatctgaatccaaagctctacctggatataaaatggtg 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 816
Length adjustment: 9
Effective length of query: 405
Effective length of database: 807
Effective search space:   326835
Effective search space used:   326835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)