BAC Information

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BAC

Clone NameMSMg01-426H23
Chromosome11 (Build37)
Map Location 8,610,696 - 8,611,019
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665380, Tns3
Downstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426H23.T7 (MSMg01no426_h23.b1)MSMg01-426H23.TJ (MSMg01no426_h23.g1)
ACCAG519923AG519924
length794781
length of high quality
(start - end)
246 (73 - 318)350 (79 - 428)
definitionCHROMAT_FILE: MSMg01no426_h23.b1 PHD_FILE: MSMg01no426_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:03 2005CHROMAT_FILE: MSMg01no426_h23.g1 PHD_FILE: MSMg01no426_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCTAGAAAGTTTTCGGTTTGTTATTTCTTCTTTGACTAAGTGCT
CATTGAGGAGAGAGTTGTTTAGTTTCCACCTGTTTGTAAGCCTTCTGTTG
TTTATATTGTTGTTGAAGTTTTCCTTTAATCCATGGTGATCTGATAAGAT
GCAAAGGGCTATCTTTATCTCTTGAGGCTTGCTTTATGGTCAATTTTAGA
GAAGGTTCTATGAGGTGCTGAGAAGAAGGTATAATCTTTTGTATTTGGGT
GAAAGTTTCTGTACATATCTACCAAGTCTTTTTGATTTATAACCTCTGTT
CGTTTCATTATTTCTCTCGTTGGTCTTTCGTCTGAAGACCCAGCCAAGGG
AGAGAAAGGCCTGTTGAACCCTCCTCCTTTTAATCTGTGTAGTTTGATCT
TCTACTTAATTCTCTTCCCCTTTTCTCTCCCTTTTGTATTACTCCTTACT
TCTTCCTCTTTATATCTTTCCCCGTTTTCATTTCTTCTCCCTTTCTTCCC
TTTTTCTTCTTCTCCTCTTCTTCCCATTTCTTCCTTTTCATTTTTTTTTT
TATTTTATATTCTTTTCAATTTTATTCATCTTTTTTTCCTTCCTTCCTAC
CCTTTTATTCTATCCATATCTTCTCTTTACTCTCTTTCCTTTTACTTTTC
TTTTCTTTTTCCCTTCTCCTTTTATTATCCTCCTACCTCCCTTATTTTTT
ACTCTCTCATTTCTTCACACTAATTCCACTTTTTCTCTCTCTTT
NTTCGATGATAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCTCTTTCTTTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGT
CTCTCTCTCTCTTTCTTTCTTTCTTTCTGACTTATATCTGGTTGACTGTG
CTTTGGTTCCCACTTCAGTCTGATTCCAGTCAATTTAGTTCAGGAGTTGC
AGGGAATTGTGGGGGAGTGCTTGGCAAGTGCTTGGCTTTTCTCCCGTATA
GACAGACCTCTTGAGGTGGGAGCTGCATATGGATGATGTCAGTACTGGTT
TCGCAGGACTGTACTCTTGATCTTCATGCACTCTCTTTCCAGATTCCCCT
GTGTGGCAGCTAAGCACCTTTGGAGGCTTCTATCCTGTCCTGGCTCCCCT
CCAATCTTCCCTGATATTTGTGGGACTTCACATTATTTTTCCCTCTCTTT
ATTTCCTCTATTTTTCTACTTTTTTCTCTCATTCTTTCTCTTTATTCTAT
TTCCTCTCTATCCGTATACTTCGTTCATTTTCCACTACTAACTCTATAAC
CTATATTCATCACTTCTTTCCATATCTTACTACGTTTTCTATAGTAAATC
TCATCTTTTATAATGAGACTCATCTAACTAGTCCTATTATATGCCGCTCT
CAACCTGTTGTTACCTTTGCACTTGTGACTCCGTATAATGTCCTCATACG
ATAATATCCCATCTCCTTCGTAGTTCAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_h23.g1 MSMg01no426_h23.g1 CHROMAT_FILE:
MSMg01no426_h23.g1 PHD_FILE: MSMg01no426_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:03 2005
         (350 letters)



>mm_chr11_8610470_8611219
          Length = 750

 Score =  584 bits (302), Expect = e-171
 Identities = 320/328 (97%), Gaps = 4/328 (1%)
 Strand = Plus / Plus

                                                                       
Query: 23  ctctctctctctctctctctctctctctctctctctctctctctgtctgtctctctctct 82
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 227 ctctttctctctctctctctctctccctctctctctctctctctgtctgtctctctctc- 285

                                                                       
Query: 83  ctttctttctttctttctgacttatatctggttgactgtgctttggttcccacttcagtc 142
              |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ---tctttctttctttctgccttatatctggttgactgtgctttggttcccacttcagtc 342

                                                                       
Query: 143 tgattccagtcaatttagttcaggagttgcagggaattgtgggggagtgcttggcaagtg 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgattccagtcaatttagttcaggagttgcagggaattgtgggggagtgcttggcaagtg 402

                                                                       
Query: 203 cttggcttttctcccgtatagacagacctcttgaggtgggagctgcatatggatgatgtc 262
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 403 cttggcttttctcccgtatagacagacctcttgaggtgggagctgcatatgggtgatgtc 462

                                                                       
Query: 263 agtactggtttcgcaggactgtactcttgatcttcatgcactctctttccagattcccct 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agtactggtttcgcaggactgtactcttgatcttcatgcactctctttccagattcccct 522

                                       
Query: 323 gtgtggcagctaagcacctttggaggct 350
           ||||||||||||||||||||||||||||
Sbjct: 523 gtgtggcagctaagcacctttggaggct 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)