BAC Information

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BAC

Clone NameMSMg01-426O07
Chromosome11 (Build37)
Map Location 115,894,625 - 115,895,066
singlet/doubletsinglet
Overlap geneUnk
Upstream geneLOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b
Downstream geneUnc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426O07.T7 (MSMg01no426_o07.b1)MSMg01-426O07.TJ (MSMg01no426_o07.g1)
ACCAG520223AG520224
length789744
length of high quality
(start - end)		244 (76 - 319)442 (77 - 518)
definitionCHROMAT_FILE: MSMg01no426_o07.b1 PHD_FILE: MSMg01no426_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:35 2005CHROMAT_FILE: MSMg01no426_o07.g1 PHD_FILE: MSMg01no426_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCAATAAATTGAGGCGCTAAACGACTCACTATTCGAAGAGGATGCGCG
GAATTCACTCTGTACCACCAGGCTGGCCTCAAACTCATAGAGATCTGGCT
GCTTCTGCACCACTACTGTCTGTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTTTCTTTCTTTCTTTCTTTCTCTCTCCCTCTCTCTCTCTTTCTT
TCTTTCTTTTTTCCTCCTCCTCCTCTTCTTCCTCCTCTTCTTCCTCCTCT
TCCTCCTCTTCCTCCTCCTCCTTCTCCTCCTCTCCCTCCTCCCCCCCCTC
CTCTTCCTTTTAGATTCTAAGTAAATCACAATGCATACCCACGGTTCAGA
ATGATTGGATAAGCAGTAGTTTCCAGAGGCTGGTCCCTGGAAGATTGAGT
GGTGTCCCAGGGTTTCTGGGCTTCTCTGGATAGATGAACCCAAAAAATCT
GGGGCCCAAATGAAACCAAAATATTGTGTAAAAACCAATTGGGGAATAAA
AGAAATTTAGGGTCACTAAACAAAAATGTACAAAATAGGAAGGTTTTCCT
TGATTCCATGGCGGTATCAATAAAGTTGGCTGAAATGTGGTAGGTGGGAT
AATATATGGTGACAGGGTAAAAAAAATTATCCCATTTACACAGTGAAAAA
GTCAATACTTCCCTGTGGTGATTTTCGAGATAAATTATATTTTGGTGGGG
AGGAAAATATTAAAAAATATATATTAGTCAACAGCATTN

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGCTTTGAACTCAGATCTGCCT
GCCTTTGCTACTTGAGTAATGGGATTAAAGGCACATGTATCATTGCCCAG
CTGTATCTGAATTTAAAAAATTTTTTTATTTTGTCTAATGTGTGTCTGTG
TGTATGTTTGTGTAGCAGGAGCATGCCTGGTACTTTTGAAGCCAGAAGGG
GACATTAAATCCTCTAAAACAGGAATTGCAGATGGTTGTGAGCTGCCATA
TGAGTGATGTGAATCAAACCAGGGTTCTCTGCAGGAGCAGCCTGCAGTGC
TGCCTGCTGAGCCGTCTGTCCAGCCCTAATATCTGAGGTTTGATCCTCTT
GATTCTCAGTTGTTTGGTATCTGTTCTATTTCTTGAGGGTTGGTACAGAG
TCATGGACCTTGGCTCCTGAGGCATCTTTATTTATTAAACCATGTATTTA
TTTTGTGTGCCTGTGGTATGAGGGTAATATATATGTGGGCATTAGTTATC
TCCTTTCTCCTATGGGATATAAAAATAAGGTTTGGTGCCTATTGTTTTTA
CCTTCCGAATCATCTTACCCTCTTGAGTGTTTTTCTTTTTCCTCTTTCCT
CTTTCCTAACTATTACCTTTTTCTTCCTCCCCTTTCTCTCCCCATCCTTT
CTTCTTCTCTTATCTCCCTTATCCCATTTCTTTATTCTTCCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_o07.g1 MSMg01no426_o07.g1 CHROMAT_FILE:
MSMg01no426_o07.g1 PHD_FILE: MSMg01no426_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:35 2005
         (442 letters)



>mm_chr11_115894425_115895266
          Length = 842

 Score =  808 bits (418), Expect = 0.0
 Identities = 436/442 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctttgaactcagatctgcctgcctttgctacttgagtaatgggattaaaggcacat 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 atggctttgaactcagatctgcctgcctctgctacttgagtaatgggattaaaggcacat 260

                                                                       
Query: 61  gtatcattgcccagctgtatctgaatttaaaaaatttttttattttgtctaatgtgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatcattgcccagctgtatctgaatttaaaaaatttttttattttgtctaatgtgtgtc 320

                                                                       
Query: 121 tgtgtgtatgtttgtgtagcaggagcatgcctggtacttttgaagccagaaggggacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgtatgtttgtgtagcaggagcatgcctggtacttttgaagccagaaggggacatt 380

                                                                       
Query: 181 aaatcctctaaaacaggaattgcagatggttgtgagctgccatatgagtgatgtgaatca 240
           ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 381 aaatcctctaaaataggaattacagatggttgtgagctgccacatgagtgatgtgaatca 440

                                                                       
Query: 241 aaccagggttctctgcaggagcagcctgcagtgctgcctgctgagccgtctgtccagccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccagggttctctgcaggagcagcctgcagtgctgcctgctgagccgtctgtccagccc 500

                                                                       
Query: 301 taatatctgaggtttgatcctcttgattctcagttgtttggtatctgttctatttcttga 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 taatatctgaggtttgatcctcttgattctcagctgtttggtatctgttctatttcttga 560

                                                                       
Query: 361 gggttggtacagagtcatggaccttggctcctgaggcatctttatttattaaaccatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggttggtacagagtcatggaccttggctcctgaggcatctttatttattaaaccatgta 620

                                 
Query: 421 tttattttgtgtgcctgtggta 442
           |||||||||||||||| |||||
Sbjct: 621 tttattttgtgtgcctatggta 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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