BAC Information

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BAC

Clone NameMSMg01-426O21
Chromosome11 (Build37)
Map Location 7,718,652 - 7,719,023
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3, LOC638720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426O21.T7 (MSMg01no426_o21.b1)MSMg01-426O21.TJ (MSMg01no426_o21.g1)
ACCAG520251AG520252
length813793
length of high quality
(start - end)		382 (45 - 426)376 (77 - 452)
definitionCHROMAT_FILE: MSMg01no426_o21.b1 PHD_FILE: MSMg01no426_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:38 2005CHROMAT_FILE: MSMg01no426_o21.g1 PHD_FILE: MSMg01no426_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCG
GAATTCAAGGCCCATACCTAAACATGATAAAGGCAATCTACAGCAAACCA
GTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGTCCACTCTCGCCCTACCTATTCAACATTG
TACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGG
ATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAAAAGTTCCACCAAAGAACTCCTAAGCC
TGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAAAAAG
TCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAG
GGAAACAACACTCTTCTCAATAGTCACAAATAATATAAAATAACCTTGGC
GTGACTCTAACTAAGGAAGTGAAGGATCGGTATGATATAAACTTTCAGCC
TCTCAAGAAAGAAATTAAAGAATACTCCCACAGATGGAAGGACTCCCCCT
GGCTCCGGGTTGGGCGGAACCAACTTGTAAAAAGGGGCATCTTGGCCAAA
AAATCTCACGAATATAGGGGAGCCCCCTCAAAATCCCCACCCATTTTTTT
CTAAAAAAAAAGGAAATGGGGGAATCTTTGGTTTATATAAAACCGAGGAT
ATGAAATCTTTTTCCCGGTAAAAAAACACTCGGGGGAAACATGCGGGCCG
ACAAAAATAAAAN

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATAGGCAGTCAGAATACCCCTG
GGGACCTGTCTCTTTCTAAGTAGGTCTCATCTTCTAAAGGTTGTACCATC
TCCTAATAACATCATGGAGACCAAAGCTTCCTTCAGCGTGCAGGCAAGAG
GGGACATTTAATATACTAACTGTCTTGTACACACAGAATACCGAGTACAC
AGAGAACATGCCAATGCTGTGTTTAGCATATATGATCATTGGAAAGAAGT
CTTTTTAGTATTAACATCTTGGAGGGTAGAAGGACAGGAGTGAGAGGAAG
CACTAGCATTCAAGAATTCTTTAATGGGTCAGGAAGTGGTAATACAACTT
TTAGTCCAGCACTCAGGATGCAAAATTATGTGGATCTCTATGAGTTTGAG
ACCAGCCTGGTCTACATAGTGAGTTTCAAACTAGCCAAGGGTTCATAGTG
AAATCCTGTCTCCAAACAGCAAACAAATTTTTTTCTTAATGTGATGAGCA
GCGAATCCTGTTTATAATAAACCTTAATAATTTTAAAATCCCTAAAGGGT
TTATGATCGAAATTTTGTGACAGCAGGCCGGGACAAAAATCATAAGGGTC
CTTGATTCCCGGGACAAAAACAAAAGGGGTTTGGTTCCCCCAACACCCTC
CCCCGGGGGTTTAAAAAATCTTCGAAAAGGTCACAAGAGGTTATACGGGT
GGGGCGTCCACCGCAAAATAGGAAAAAGTCCCTCTTCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_o21.g1 MSMg01no426_o21.g1 CHROMAT_FILE:
MSMg01no426_o21.g1 PHD_FILE: MSMg01no426_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:38 2005
         (376 letters)



>mm_chr11_7718525_7719300
          Length = 776

 Score =  650 bits (336), Expect = 0.0
 Identities = 363/372 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgataggcagtcagaatacccctggggacctgtctctttctaagtaggtctcatcttcta 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 499 tgataggcagtcagaatacccctggggacctgtctccttctaagtaggtctcatcttcta 440

                                                                       
Query: 61  aaggttgtaccatctcctaataacatcatggagaccaaagcttccttcagcgtgcaggca 120
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaggttataccatctcttaataacatcatggagaccaaagcttccttcagcgtgcaggca 380

                                                                       
Query: 121 agaggggacatttaatatactaactgtcttgtacacacagaataccgagtacacagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agaggggacatttaatatactaactgtcttgtacacacagaataccgagtacacagagaa 320

                                                                       
Query: 181 catgccaatgctgtgtttagcatatatgatcattggaaagaagtctttttagtattaaca 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 319 catgccaatgctgtgtttagcacatatgatcattggaaagaagtctttttagtattaaca 260

                                                                       
Query: 241 tcttggagggtagaaggacaggagtgagaggaagcactagcattcaagaattctttaatg 300
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 259 tcttggagggtagacggacaggagtgagaggaagcactagcattcaagaattctctaatc 200

                                                                       
Query: 301 ggtcaggaagtggtaatacaacttttagtccagcactcaggatgcaaaattatgtggatc 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 199 ggtcaggaagtggtaatacaacttttagtccagcactcaggatgcagaattatatggatc 140

                       
Query: 361 tctatgagtttg 372
           ||||||||||||
Sbjct: 139 tctatgagtttg 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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