BAC Information

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BAC

Clone NameMSMg01-427O03
Chromosome11 (Build37)
Map Location 74,335,473 - 74,335,854
singlet/doubletsinglet
Overlap geneGarnl4
Upstream geneOlfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412
Downstream geneE130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427O03.T7 (MSMg01no427_o03.b1)MSMg01-427O03.TJ (MSMg01no427_o03.g1)
ACCAG520977AG520978
length790775
length of high quality
(start - end)		230 (71 - 300)381 (82 - 462)
definitionCHROMAT_FILE: MSMg01no427_o03.b1 PHD_FILE: MSMg01no427_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:53 2005CHROMAT_FILE: MSMg01no427_o03.g1 PHD_FILE: MSMg01no427_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTCGTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGCAATTTGCACACTATTGGCTTATTCAAAATCAGCAGAAAA
ATTATATGTACATGCAGATAGGGTGTCAGAGTTCTGTGAGTTGGATGTTT
ATCAATGCTAGCAGAGTATCTGGTCAATTTGACTCAGTTCAGATAGCCCT
GTTATGTCCTCACATTCCTCTTTATCTTTATGGTCAAGCTGTTCCCAGGA
ATGTTTTAACTATGGAGCATGTCGGGGTTCGTTTGTTTTTTTCTTAGCCC
CCGGCAGCCTCTAGGCTCATTTACTACTTTCAACTTCTGAGTACTTTATA
CTACTTAGAGGTCTTGACCTTGCATCTTTCTTTCATATGTAAATGATCCT
ATCTCACCAATTCGCACCCACCGTTTAACATGCTGGTTTAAATATGTTGT
ATCTATCCTGTTTATGATGCTAATGCTATGTCTCGATAGACTTTTCTATT
AAGAGTACTTGCTGTTCCTTTCGAGTACCTAGTTTTCTGTTCTCTCATGT
CATCTTCCTATTCTCCTGTTACTCCCGGTCTTGCATCTTCCTTTTTCTGT
TCATCCAATGTCCCCTTTCTCCTCCCTTGTTGTTTTCCTCTTTCATTATT
ATTTATGTTTCCGTAATATAGTCTTTTCTTTTTTTCTTTGCCACTCCCTC
TAGTCTTCTTCCCTATACCATCTCAATTTTTGTTTCTCTTATTCTTGCTC
TGTTTGTTTCTTTCTTTGTTTCTTTTTATTTTCCCCTAAN

NNNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTGTCTTTCGGGTGGA
CTTTTCCTTTTGGCTCCTTGTTGGATAGGAAAAAAGCCTGGCTGGCTCTG
ACGGGACACTAGCGGAGTCGGAGGGGCCCCCAGACCTGACATTTACGGAT
CCTGGTACCCATCCCGAAGCCTGCAGAGCGAAGAGACTTGCGCTACTGTC
CCTGGCTCAGCCCAAGCTTCTCTGTAACTTGGCTGAGCCCGCGGGCTGCC
TTTCTGGCACCGCGTGCTCTGTGCTTGGGTGCCGGCAGGCAAGGACCAAG
TTTGGAGGTGGCTCAGCCCCCGCCTCCCCGCCGTATCTGGTTTTGGGTGT
TCCCCTCTTTGACTCTTTTCTTGAGATTGTTCGATCTTCAGTTTGCTACT
GGGCGTTGAAGATTGCTCGCTAGGCGATTTCAGGGACACCGTGTACATCT
GCGTGTTGTGAGGCGTGCGACCCCATTCTTCTGCCCTTTTCTCTATCTCT
TCCTCCTTTTCCTTCTTTACCGTTCTTCNTTCTCTTCACCTCCTCCTCTT
CGCCTTCTTTGTCCTTTTTTTCTTCACCTCTCTTTCTTTCTCTTCCTTTT
GCTCTTTTCTCTCTTTTCTTTCCTTTAACCCTTTCTCCGTTTCTTACGCC
TCTCTTCTTATACTTCCAATTGAATATACATTTTCGTCTTCTCTTTCTCC
TTTCTTCTCCTCCTCTCTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_o03.g1 MSMg01no427_o03.g1 CHROMAT_FILE:
MSMg01no427_o03.g1 PHD_FILE: MSMg01no427_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:53 2005
         (381 letters)



>mm_chr11_74335273_74336054
          Length = 782

 Score =  716 bits (370), Expect = 0.0
 Identities = 379/382 (99%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttgtctttcgggtggac-ttttccttttggctccttgttggataggaaaaaagcctg 59
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cagttgtctttcgggtggactttttccttttggctccttgttggataggaaaaaagcctg 523

                                                                       
Query: 60  gctggctctgacgggacactagcggagtcggaggggcccccagacctgacatttacggat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gctggctctgacgggacactagcggagtcggaggggcccccagacctgacatttacggat 463

                                                                       
Query: 120 cctggtacccatcccgaagcctgcagagcgaagagacttgcgctactgtccctggctcag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cctggtacccatcccgaagcctgcagagcgaagagacttgcgctactgtccctggctcag 403

                                                                       
Query: 180 cccaagcttctctgtaacttggctgagcccgcgggctgcctttctggcaccgcgtgctct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cccaagcttctctgtaacttggctgagcccgcgggctgcctttctggcaccgcgtgctct 343

                                                                       
Query: 240 gtgcttgggtgccggcaggcaaggaccaagtttggaggtggctcagcccccgcctccccg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtgcttgggtgccggcaggcaaggaccaagtttggaggtggctcagcccccgcctccccg 283

                                                                       
Query: 300 ccgtatctggttttgggtgttcccctctttgactcttttcttgagattgttcgatcttca 359
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 282 ccgtatctgtttttgggtgttcccctccttgactcttttcttgagattgttcgatcttca 223

                                 
Query: 360 gtttgctactgggcgttgaaga 381
           ||||||||||||||||||||||
Sbjct: 222 gtttgctactgggcgttgaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 782
Length adjustment: 9
Effective length of query: 372
Effective length of database: 773
Effective search space:   287556
Effective search space used:   287556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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