BAC Information

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BAC

Clone NameMSMg01-428B13
Chromosome11 (Build37)
Map Location 98,000,283 - 98,196,969
singlet/doubletdoublet
Overlap geneFbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2
Upstream geneTbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2
Downstream genePpp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428B13.T7 (MSMg01no428_b13.b1)MSMg01-428B13.TJ (MSMg01no428_b13.g1)
ACCAG521141AG521142
length747756
length of high quality
(start - end)		245 (71 - 315)474 (78 - 551)
definitionCHROMAT_FILE: MSMg01no428_b13.b1 PHD_FILE: MSMg01no428_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:10 2005CHROMAT_FILE: MSMg01no428_b13.g1 PHD_FILE: MSMg01no428_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,000,283 - 98,000,526)(98,196,496 - 98,196,969)
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCTGTTTTGCTGACCTGAGAGCTCTGTCACCTCTGCAGATGGTAA
GGCCTGGGTTAGACTTGCAGCACTGTAAAACTACAGGAATAAAGTAACAC
AGAAAATACCATTATTCTCTTGTGTGTTTGATACAACACAGGCTAGCCTT
GAACTCATTATATAGCCCAGGTCGGTCTTAAACTGAGAACAATCTCCCTG
TCTTAGCCCCACTCAGAGCTGACTGTCTCCGTTGTTTGTTCCATCTATGA
GACAAGGTCTCAAGTATTTTATGCTGACCTCAAACTTCCTACGTAGCTGC
ACTTCTGATCCTCCTGCCTCCACCCCCATGTTCATATGGCACTACGAAGG
ACTCGCATACAGGGCCTTGCCTTAAGCAAATATTCACTCAGCCGAACCAC
ATCCCCACCTCCTCCTCTTTAGGGAATGTGTCGACTTATCAAAGCTGTAC
TTTTCTGTTGGACTTTTAAAGGCAGGTCTACATTTCAGAGGCATTTATAC
AACAGAAGTCAATTGTGCCTAAGAATACTGATTATTAATGAAGCCTCCTA
TCTTTGTATGTTACAGTTCATGACGATATACTACGAAAATATAGCATTAA
TCACCTATTCTACTTTTTTCTTTGAGAATTTCTCAATAAAATATCACTCT
CTCTATAATGGCAATGCTCACATAATTTTCTACGTGGTGTTCTCCTN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAGGGCGACACAGA
GAAACCCTGTGGTGGGAAAGGATGAAAGTCACACTCACACATCCCGGCTG
GGGGTGGGTCTCAGGAGAGCTCCTGAGCTGAAAGACTTGAGGATCAAACA
GGGAGTCTACCACAGGGCAGGCACCGGTCTGATATAGCCATGTAGCACAA
GACCTCATAGTGTTAGTAAAACAGAGCGTGCTGCACGGAGGAGAGGACCA
CGCCCCCTCCTCCAAGTCTGACTGATAAGGGCCACGCCCCCTCCCTCCAA
GTCTATCTAACAAATGTGTGGTTTGTTTTGCTTTGGTTTCAAAGCTGTTC
CCATTGCCCCCATTCGGCCTGGACTCTATTTAGCAGGCACTGCCCTTGAA
CTTCTGGTCTTCCACCTCTTGGATGCTGGGGATCAGACCCAGGAACTTGA
CAAACTTTCTACCAACTGAGCTACACCCCAAGTATCCCAGATTGACATTT
GTACAAGGAGACCACTGGGCATGGCAGCCACTCTGGTTTGCCTGCCCCAG
AAATCCCAATGACTCCGCTGGCCACTGTTTCTCTAAGCCTAGTAATATGG
TTGATGTGTGAGCCCCCACTATAGACTCCCTAATGGCTTTTGTAAACCTA
CCCAACCACAGTTGGTAAATGTTGTTTTCCTCCCCGTTATTTATTTTTAT
TCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_b13.b1 MSMg01no428_b13.b1 CHROMAT_FILE:
MSMg01no428_b13.b1 PHD_FILE: MSMg01no428_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:10 2005
         (245 letters)



>mm_chr11_98000083_98000727
          Length = 645

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagagctctgtcacctctgcagatggtaaggcctgggttagacttgcagcactgtaaaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tgagagctctgtcacctctgcagatggtgaggcctgggttagacttgcagcactgtaaaa 260

                                                                       
Query: 61  ctacaggaataaagtaacacagaaaataccattattctcttgtgtgtttgatacaacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacaggaataaagtaacacagaaaataccattattctcttgtgtgtttgatacaacaca 320

                                                                       
Query: 121 ggctagccttgaactcattatatagcccaggtcggtcttaaactgagaacaatctccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctagccttgaactcattatatagcccaggtcggtcttaaactgagaacaatctccctg 380

                                                                       
Query: 181 tcttagccccactcagagctgactgtctccgttgtttgttccatctatgagacaaggtct 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttagccccactcagagctgactgtctccgttgtttgttccatctatgagacaaggtct 440

               
Query: 241 caag 244
           ||||
Sbjct: 441 caag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no428_b13.g1 MSMg01no428_b13.g1 CHROMAT_FILE:
MSMg01no428_b13.g1 PHD_FILE: MSMg01no428_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:10 2005
         (474 letters)



>mm_chr11_98196341_98197214
          Length = 874

 Score =  855 bits (442), Expect = 0.0
 Identities = 466/474 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagccagggcgacacagagaaaccctgtggtgggaaaggatgaaagtcacactca 60
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 629 caggacagccagggcgacacagagaaaccctgtgatgggaaaggatgaaagtcacactca 570

                                                                       
Query: 61  cacatcccggctgggggtgggtctcaggagagctcctgagctgaaagacttgaggatcaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 569 cacatcccggctgggggtgggtctcaggagagctcctgagctgaaagacttgaggaccaa 510

                                                                       
Query: 121 acagggagtctaccacagggcaggcaccggtctgatatagccatgtagcacaagacctca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 509 acagggagtctaccacagggcaggcaccggtctgatatagccatgtagcataagacctca 450

                                                                       
Query: 181 tagtgttagtaaaacagagcgtgctgcacggaggagaggaccacgccccctcctccaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tagtgttagtaaaacagagcgtgctgcacggaggagaggaccacgccccctcctccaagt 390

                                                                       
Query: 241 ctgactgataagggccacgccccctccctccaagtctatctaacaaatgtgtggtttgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 389 ctgactgataagggccacgccccctccctccaagtctatctaacaaacgtgtggtttgtt 330

                                                                       
Query: 301 ttgctttggtttcaaagctgttcccattgcccccattcggcctggactctatttagcagg 360
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 329 ttgctttggtttcaaagctgttcccattgcccccgttcagcctggactctatttagcagg 270

                                                                       
Query: 361 cactgcccttgaacttctggtcttccacctcttggatgctggggatcagacccaggaact 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cactgcccttgaacttctgatcttccacctcttggatgctggggatcagacccaggaact 210

                                                                 
Query: 421 tgacaaactttctaccaactgagctacaccccaagtatcccagattgacatttg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgacaaactttctaccaactgagctacaccccaagtatcccagattgacatttg 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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