BAC Information

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BAC

Clone NameMSMg01-428I04
Chromosome11 (Build37)
Map Location 3,079,724 - 3,080,011
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428I04.T7 (MSMg01no428_i04.b1)MSMg01-428I04.TJ (MSMg01no428_i04.g1)
ACCAG521459AG521460
length754741
length of high quality
(start - end)
288 (80 - 367)---
definitionCHROMAT_FILE: MSMg01no428_i04.b1 PHD_FILE: MSMg01no428_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:42 2005CHROMAT_FILE: MSMg01no428_i04.g1 PHD_FILE: MSMg01no428_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCCGACTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAACGAG
AGCGCGGAATTCAGCTAATTCTATACAAAGGGAAAGCTGAAATCTTCACA
CACTATGCAGGAAGCGAAAACTACGCTTCTAAGGAGCAGGTGAAATAAAG
CCACAGAAGCCAGACAACATGGGCTTGATCTCAGGACCATGAAAAGGTGA
AGAGAGAGAAGTGACTGTACAAAGTGGCCCTCTGGCCTCCTCGTGGGTAT
CATGGTATGTACACAGCTACACACCACACACAAACTTAATAATAGAAAAT
TAAGCTACTATAACTGCCAACTTTTTTATTTGTATAGATTAAATCAGAGA
CTTTTCATTCCCTCTTCACTGTGTGTGAAGCGGAGCACAGCGGCGCAGGT
TCCAGAGACTGTGCCAAGTCCTGGGGCTCGATAGTAAGTCCCACTTTCTC
TTTTTAGTTTTCTGGGACAGGATTTCTCTGTGTATCCTGTAGGTCATGAT
TCTCTGTATATACTCCAGTTTTGCTCTGATTTCACTGATATGCCCACTCG
TCTCCCAGCCTCCCTCTCTGTTTCTCTGCTCTTTCTCTCCGCCCTTCCTG
ACTCATTCTTTTGCTTATTTTGCCTCTAATCTCCCGCATCTCTGTCCCCC
TTCCCCTGTCTCCCCTCATCTGTTTTCCTTGGTCTTCTTTTCATGGCCTT
ATTACGTTTTCCCCTCCCTCGCTTTTTCCTGTTATTATATTCATCCCCCC
CCCN
CAACAACTACCAAAAACAAAAAAAGCCCAACACAAAAAAAAGAAAAAAAA
AAAAAAGAAAAAAAAAAAAAAACCAATAAAGCTAAACAAAAAGAACCATA
CACAAAAAAAAATCAGTAAACCAGAAAAGAAAAAACCCAACCAAAAAAAA
CCAAAAACACACAAAACACCACAACACAACAACAGACAAAAACAAACACT
AGCAAAAAAAGCACCAAAGGAAAACAAAGAAAAAAGCCCACGCACAAGAC
ACAGGCGGGGCCAAAAAAAAACACACAAAAACCAGCCCCCCCCCAATAGA
AACAAAAAAAAAGAGGGGGGGCCAAAAAAAAGCCCCCCCGGGGGGAGGGG
GGGAAACACCGGCNCCCCCGGGGTTTTTATCGTTCTCCCCAAAAAAAAAA
AAAAAGAGGGGGAAAAAAGGNNGGGGGGAAAAAACACCCCCAAAAAAAAA
AGGGAAAAAATTATTTTTTTTCCCCCCCCCCCCAAAAAAAAAAAAAAAAA
AAAAANNNCNCCAAACAAAAAAAAAAAAAACCCCCCCCCCAAAAAAAAAA
ACAAAGCAAACAAAAAAAAAAAAACCGACCAGACCCCAGCACGACACAAA
AAAAAAAAAAAAAAAACAAAGGGCGCCGCCGCCCAACAAACCCCCAGAGC
GGAGCCCAACAAAAAAAAAAAAACGAGAGCGCCCCAATCAAAAAATAACA
AAACAAAAAACCCCACCACACAAAACAAAACCAACAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_i04.b1 MSMg01no428_i04.b1 CHROMAT_FILE:
MSMg01no428_i04.b1 PHD_FILE: MSMg01no428_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:42 2005
         (288 letters)



>mm_chr11_3079524_3080211
          Length = 688

 Score =  503 bits (260), Expect = e-147
 Identities = 281/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggaaagctgaaatcttcacacactatgcaggaagcgaaaactacgcttctaaggagcag 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gggaaagctgaaatcttcacacactatgcaggaagcaaaaactacgcttctaaggagcag 260

                                                                       
Query: 61  gtgaaataaagccacagaagccagacaacatgggcttgatctcaggaccatgaaaaggtg 120
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gtgaaataaagccacagaagccggacaacatgggcttgatctcgggaccatgaaaaggtg 320

                                                                       
Query: 121 aagagagagaagtgactgtacaaagtggccctctggcctcctcgtgggtatcatggtatg 180
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 321 gagagagagaagtgactgtacaaagtggccctctggcctcctcatgggtatcatggcatg 380

                                                                       
Query: 181 tacacagctacacaccacacacaaacttaataatagaaaattaagctactataactgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacacagctacacaccacacacaaacttaataatagaaaattaagctactataactgcca 440

                                                           
Query: 241 acttttttatttgtatagattaaatcagagacttttcattccctcttc 288
           ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttttaattgtatagattaaatcagagacttttcattccctcttc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)