BAC Information

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BAC

Clone NameMSMg01-428I06
Chromosome11 (Build37)
Map Location 79,462,873 - 79,623,798
singlet/doubletdoublet
Overlap geneRab11fip4
Upstream geneNlk, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, OTTMUSG00000000185
Downstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428I06.T7 (MSMg01no428_i06.b1)MSMg01-428I06.TJ (MSMg01no428_i06.g1)
ACCAG521463AG521464
length813743
length of high quality
(start - end)
174 (78 - 251)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no428_i06.b1 PHD_FILE: MSMg01no428_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:43 2005CHROMAT_FILE: MSMg01no428_i06.g1 PHD_FILE: MSMg01no428_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,623,625 - 79,623,798)(79,462,873 - 79,463,112)
sequence
NGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAGGTGTTGCTCATTCACTCACTCGTTGTTGATTTCCACAGG
TTAGCCCTCATATCACTCGATCACTCGAGGCAGAACCCTCTGGTGAGTAT
TGGGCGTTGGTTATACCTGCCATTCTTTTCTTCAGGTTCCTGGACACCAA
AGTCGCTGACCCCAGAATTACAAGACTGGCGATTCCAGAACAGTCCTGGA
TAGAAGCTGAGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGGGGCG
TGTGTGTGCGCGCGCTTTTGCTAGATTTAGCCAGAGCCCCGAAAACACAC
GACACTTTTTTTCTTCCCCCCCTCCTCTCGGGCAGAGTGGTATGGTTGGT
TGACTATATTATGCCGCGTCATATATTTTTGCGCTCCCTCTCTTTTCTCT
AGCCTCCGCACTTATTTTTGTCCTTTCTCTCACCTTTGTTGTCTTTATAT
GTTCCTCTCTTTTATTTCCTTATGTCAGGTACTTCTTTTCCCTATTTTAT
CATCGTTTCTTCTACTTCCTTACCGCCCCTTTTTCTACCTATTTTTTTAT
CTCTTTTTTTTTCCGCTTTCTTTCGTCCGCTCCTAACATCTTGCACCACT
TTTTCTTCCTCTTTATATCCCGTCTTTTTACCCCCTTAGCCCCCCCTTCC
TCTTTCTCTTTATTCTTCGTCGCTCCTAATCCTGCGGTCTTACGCAGGTC
TTTTGCTTATTTATCATTTTCCCTCTCCTCTTCTTTTACCCTTTTTTATC
TTTTCCTCCCTCT
ATACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGATCTCTGTAGGCCCCAGCCCCTC
ATTTTCCTACCTTCAAAAGTGTGTGCTGTAGCAGGCCCTCCCCAGGGGGC
AACCCGGGCTTTCTCACCAAGGAATTGCAGCTACCCCTGGAGCCACCTGC
CTTCCATTGCTGGCCAAGAGGGATTCAAAGCTTCTACCTCTGTGCTTCGT
TTTTGGACAACTTGAGGTGATCATCCCTACTCTGGAGCCCCGTGAGAGCC
GGTGAGATCCCTCAGCCTCCTGTCTTTCTTGTACTTTCAAGGGTCTGATG
CCTAGGACACCCCTGTGGCTTCCTTCAAGCGGCTGGGTGTAGGGGTCTGG
AGTTCAGGAGAGAGGTCCAGGCTGGGTATCAACATGCAATGAGGAGGAAG
CCTGTATCTCCAGGGGCTCAGGTGTTGAAGAACGCTGGGTCATTATTCAC
CGACTCAGAGCTGGTAGTGACTTTATAGCGAACGCAACCGCTGCAAATAA
TGATAAGGGGCTGGATGCCGTGGTGTACCCCTGCAACTTCAGCGCTCTGG
GAGGTTGTTTTATGACGCCCATAATGTAAAAGTCCTGTCTTAACTCAATG
ATGATCTTACCCATTATTTTTGTTTGTCCGTGTCCCCCCGCGTCCCATAA
TCGCTCGCCTCACCAGAATGGATGCTTCTTAAGCCTGTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_i06.b1 MSMg01no428_i06.b1 CHROMAT_FILE:
MSMg01no428_i06.b1 PHD_FILE: MSMg01no428_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:43 2005
         (174 letters)



>mm_chr11_79623425_79623998
          Length = 574

 Score =  337 bits (174), Expect = 3e-97
 Identities = 174/174 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactcgttgttgatttccacaggttagccctcatatcactcgatcactcgaggcagaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cactcgttgttgatttccacaggttagccctcatatcactcgatcactcgaggcagaacc 315

                                                                       
Query: 61  ctctggtgagtattgggcgttggttatacctgccattcttttcttcaggttcctggacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctctggtgagtattgggcgttggttatacctgccattcttttcttcaggttcctggacac 255

                                                                 
Query: 121 caaagtcgctgaccccagaattacaagactggcgattccagaacagtcctggat 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caaagtcgctgaccccagaattacaagactggcgattccagaacagtcctggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no428_i06.g1 MSMg01no428_i06.g1 CHROMAT_FILE:
MSMg01no428_i06.g1 PHD_FILE: MSMg01no428_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:43 2005
         (240 letters)



>mm_chr11_79462673_79463312
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatctctgtaggccccagcccctcattttcctaccttcaaaagtgtgtgctgtagcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatctctgtaggccccagcccctcattttcctaccttcaaaagtgtgtgctgtagcagg 260

                                                                       
Query: 61  ccctccccagggggcaacccgggctttctcaccaaggaattgcagctacccctggagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctccccagggggcaacccgggctttctcaccaaggaattgcagctacccctggagcca 320

                                                                       
Query: 121 cctgccttccattgctggccaagagggattcaaagcttctacctctgtgcttcgtttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgccttccattgctggccaagagggattcaaagcttctacctctgtgcttcgtttttg 380

                                                                       
Query: 181 gacaacttgaggtgatcatccctactctggagccccgtgagagccggtgagatccctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaacttgaggtgatcatccctactctggagccccgtgagagccggtgagatccctcag 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)