BAC Information

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BAC

Clone NameMSMg01-429B19
Chromosome11 (Build37)
Map Location 13,416,828 - 13,417,213
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429B19.T7 (MSMg01no429_b19.b1)MSMg01-429B19.TJ (MSMg01no429_b19.g1)
ACCAG521918AG521919
length746745
length of high quality
(start - end)
588 (60 - 647)385 (73 - 457)
definitionCHROMAT_FILE: MSMg01no429_b19.b1 PHD_FILE: MSMg01no429_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:29 2005CHROMAT_FILE: MSMg01no429_b19.g1 PHD_FILE: MSMg01no429_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCAATAAT
CTCCCGCACAGAGATTTTTGTAGGAAAAGCAGCCATCTGTTCTCTTACCA
TAGAACTTGAGAAGCTGCTCGTCCCTATAAGAGCAGCGTTTATAATCAGC
GCCTAGCAGGGCTTCTCCAGCCACACTAGATTCTTAACTACAGATGCAGG
GCTCCAAAGACCAATTAATACTGTTTATTTTATTTTATTACCAAATTATC
TCCAGATAGTCGGAGAGTACTGCTTTTCTCAAAACCCATTCTCTCACATC
TCAGGTGTAAACTATCTCTAGTCAGGGTATAAAGCACCTATGAGAATTAC
CTTTGCTTTTTTAGATTTTCACATAGCTCTAAACACATACACAAAAACAC
ATAAAACAGAAACCAACAGATCCAGACACACTCGACCCTTTCTTGTCCTC
CACAAGCAGGCAAAAGAATTAGAAGATTTTGGAGGGGGAAGCTTCCGCTT
CAACAGAACTCGGTCCCTCTGACCGATCTCTGGAGACGGCCAGGCATCCC
TGGCTCTCCTTACCTCCCAGGGCGTCCCCCAGGGCCACAGCCTGTGGTCC
TCCTAGCACGTCTGCCAACCACAGTCCTCCGGTCCTTACGGCCCAAAAGG
ACAGCTGTAAATACCGACCTCGTGCACATTTCAGAAAACCCCATCACCCC
ATCCTCTACAAACACCGTCGTCCACTTCTACCTAGATGACCACAAC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAAAGAGTTTTCCTTCTACTTCATGA
TATGTAAAAGTTAGTGCTAAGGTACAAAGATTATTATAATTTAGGAAAGC
TAGGAATATTTAGCATGTGAAAATGAATAAATGAGAAGATTAAATTACTT
ATGATAGACTCATATGCATCTTGTTATAAATCTCATTAACTACTTCAAAG
TAGTTTGATACAATTGCTATGCTGAAACTTTCTGCTTTATGCCTGAGATA
GCATGACATTAAACCCTTTCCTATAAATGGCATTTTCATTTTCTTTTATT
TAAGTGTTCATTCTTCAGTTTGTTAGGGTCTTTCAAGGCAAAATACTCCC
AGTTTAATCACTCTGTTAGAGAAATACAGACTACAGCTGCTCAGGACCTG
GAGTGCCTGAGGCCTCCCTAGTACAGGCTTCTTTTACTAGTGAAAGAGTT
TGACAGCCCCACGCTCTAGTGGTTCCTTAATATTTGGGACTGCTTGCCTC
CCCGNAAGCACTGGCAAAATGAAATCCCAGTGAACTCCAGAATAATTTCC
TAACCTGCCCGGGGACCCACTTTCCTGAGAAACCCCTAAAACCTCCCCCT
TAAAAACCCGGGGAAAAAAAGCCAAAACGTAACCCATAAAACGGGTCCCC
CCTCCCCACGAAATCGGGGGGAAAATCCCCTGCTTATTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_b19.g1 MSMg01no429_b19.g1 CHROMAT_FILE:
MSMg01no429_b19.g1 PHD_FILE: MSMg01no429_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:29 2005
         (385 letters)



>mm_chr11_13416628_13417413
          Length = 786

 Score =  723 bits (374), Expect = 0.0
 Identities = 383/386 (99%), Gaps = 1/386 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaagagttttccttctacttcatgatatgtaaaagttagtgctaaggtacaaagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaagagttttccttctacttcatgatatgtaaaagttagtgctaaggtacaaagatt 260

                                                                       
Query: 61  attataatttaggaaagctaggaatatttagcatgtgaaaatgaataaatgagaagatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attataatttaggaaagctaggaatatttagcatgtgaaaatgaataaatgagaagatta 320

                                                                       
Query: 121 aattacttatgatagactcatatgcatcttgttataaatctcattaactacttcaaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattacttatgatagactcatatgcatcttgttataaatctcattaactacttcaaagta 380

                                                                       
Query: 181 gtttgatacaattgctatgctgaaactttctgctttatgcctgagatagcatgacattaa 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gtttgatacaattgctatgctgaaactttctgctttatgcctgggatagcatgacattaa 440

                                                                       
Query: 241 accctttcctataaatggcatttt-cattttcttttatttaagtgttcattcttcagttt 299
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 accctttcctataaatggtatttttcattttcttttatttaagtgttcattcttcagttt 500

                                                                       
Query: 300 gttagggtctttcaaggcaaaatactcccagtttaatcactctgttagagaaatacagac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttagggtctttcaaggcaaaatactcccagtttaatcactctgttagagaaatacagac 560

                                     
Query: 360 tacagctgctcaggacctggagtgcc 385
           ||||||||||||||||||||||||||
Sbjct: 561 tacagctgctcaggacctggagtgcc 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 786
Length adjustment: 9
Effective length of query: 376
Effective length of database: 777
Effective search space:   292152
Effective search space used:   292152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)