BAC Information

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BAC

Clone NameMSMg01-429D07
Chromosome11 (Build37)
Map Location 63,840,775 - 63,841,065
singlet/doubletsinglet
Overlap geneCox10
Upstream geneTekt3, Pmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1
Downstream gene2810001G20Rik, EG544785, Hs3st3a1, LOC626959, Elac2, AU040829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429D07.T7 (MSMg01no429_d07.b1)MSMg01-429D07.TJ (MSMg01no429_d07.g1)
ACCAG521989AG521990
length793736
length of high quality
(start - end)
---291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no429_d07.b1 PHD_FILE: MSMg01no429_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:37 2005CHROMAT_FILE: MSMg01no429_d07.g1 PHD_FILE: MSMg01no429_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCCCCCGCTAAACCACTCCTATTACCACACCCACCCCCCAAATTCTC
ATGTGCCCTCACTAGCTCCTTTTTACCCTTGGATAGCAATTTTAAAAACA
CAAAATTGTGAACTGTGTGTCTGTGTCTGTGTACTGTGTGTGTGTCTACT
CTGTGTGTGCTCATAACACCAGCCCCCCCCCCCATATACCCAACCCACCC
CCATCCCCATCCACCCAACCCCCTCACCCCCCCCCCCACTTTCCTCCCCC
CCACCCCCCCACCACAAAACTATTACCCCCCCCCCACCTCCCCCCCACCC
CCCCCCCACCCCTCCTTTTTTTCACCCACCCAACCACCCCCACCCCAAAA
CCCCCCCCCCCCTCCTCCCCCCCCCCCCCACCCACCCACCACCCCAACCC
CCCAACCCACCCACCCCCCCCCACCTCCCCCACCCCTCACCCCCCCCCAC
CTCCCCACCCCCCCCTCCCCACCCCCCCACCCCCCCAATCACACCCCTAA
AACACCCCCCCCCCCCCCCCCCCACCCAACCCACCCACCCCCCACCCCCC
AAAACCACCCCCCCCCACCCCCCCCCCCCCCACCCACCCCCCCCACCCCC
CCCCCACCCACCCCCCCCCCAACTCCCCCCCACCACCCCCACCCCCCCAA
ACCCCCCCCCCCCCCAAACCACAACCCCCCCCCATCCCCCCCCCCAAAAA
AAACACCCCCCCCCCCCCACCCCACCCGCCCAATACCCACCCCAACTCCC
CCCCANCCCACCCCCCCACCCACCACCCCACCCCACCCCCACG
ATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTCAACTTCATGTAAAAGTATTGCTAGT
TATTTACTTCTAATTAGGGAATACAGAGGACATTTTATTTATAACAGTGT
TAAACACCTCTTATTTCCATTGCTTTTAAAGAACGGTGGCTGAAAGATAA
CCTCAATGAAGCAGCCAAACAGGGTATATGCTAAGACAGTGATGTGAAGA
CACCCCAGCACAGGAGTTTTCCAAGGAGGGACCTGACGGCCAAGTGTTCC
CGAGCTGGCCCCACGCACTTTTTGTCTAATGAAGCTCTCTGAGTGACAGC
GTTTCCAGAGTGAACTGTCTCCAGGTTTGCGGCTGGGCTGTGGTGGTAAC
GCCCACACTGGCAATGTGCCTTATGCCTTCCTTACTCCAGGCTCCCTAAT
TCCTACACAACCCTGCCCCACCTCTTATCATGGCAACCATTATACCGACA
CCACCAGGTCCACTGCTTGCTCCCATCACTTTGCCCCCTCGAGGCCCCCC
TACGTGTGCGCTTTTTCTTCCCCCCCCATTACCTCTGACTATCCAATAAC
TGTTTTGCCCTATTTGCCTTTTGACCAACCCATGCCCTTCCCCTCACTCT
CTATCCTCTCTCCCCTCATCCTATATTCCCGCGCCCCATCCCCCCCTCCC
ATCCTTTCCATCCTCCCCTTTCTTCATATCCACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_d07.g1 MSMg01no429_d07.g1 CHROMAT_FILE:
MSMg01no429_d07.g1 PHD_FILE: MSMg01no429_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:37 2005
         (291 letters)



>mm_chr11_63840575_63841265
          Length = 691

 Score =  485 bits (251), Expect = e-141
 Identities = 281/291 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaacttcatgtaaaagtattgctagttatttacttctaattagggaatacagaggacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaacttcatgtaaaagtattgctagttatttacttctaattagggaatacagaggacat 260

                                                                       
Query: 61  tttatttataacagtgttaaacacctcttatttccattgcttttaaagaacggtggctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatttataacagtgttaaacacctcttatttccattgcttttaaagaacggtggctga 320

                                                                       
Query: 121 aagataacctcaatgaagcagccaaacagggtatatgctaagacagtgatgtgaagacac 180
           ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aagataacctctatgaagtagccaaacagggtatatggtaagacagtgatgtgaagacac 380

                                                                       
Query: 181 cccagcacaggagttttccaaggagggacctgacggccaagtgttcccgagctggcccca 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 cccagcacaggagttttccaaggagggacctgagggccaagtgttcccgagctggcccca 440

                                                              
Query: 241 cgcactttttgtctaatgaagctctctgagtgacagcgtttccagagtgaa 291
           ||||| |   ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 441 cgcacctgcagtctaatgaagctctctgagtgagagtgtttccagagtgaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)