Query= MSMg01no429_k05.b1 MSMg01no429_k05.b1 CHROMAT_FILE:
MSMg01no429_k05.b1 PHD_FILE: MSMg01no429_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:11 2005
(516 letters)
>mm_chr11_37936268_37937183
Length = 916
Score = 737 bits (381), Expect = 0.0
Identities = 500/585 (85%), Gaps = 74/585 (12%)
Strand = Plus / Plus
Query: 3 atatgatattcctcaggattttcagctgggtttgcacaggacaccttcctgaacaagact 62
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 atattatattcctcaggattttcagctgggtttgcacaggacaccttcctgaacaagact 190
Query: 63 cagaagggtatacctatttcttcttcttctcttgtctccttccttccttccttttctttc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 191 cagaagggtatacctatttcttcttcttctcttgtctccttccttccttccttct-tttc 249
Query: 123 ttcattccttccttttctttcttccttccttccttcc-----ttc---cttccttccttc 174
||| ||||||||||||||| ||||||||||||||||| ||| ||| ||| |||
Sbjct: 250 ttccttccttccttttcttccttccttccttccttcctttctttctttctttctttcttt 309
Query: 175 ctttctttctttctttctttcttt----tttcct-------------------------- 204
|||||||||||||||||||||||| ||||||
Sbjct: 310 ctttctttctttctttctttcttttttctttccttccttccttccttccttcctctctct 369
Query: 205 ----------------------------------tt-ctttctttctttctttctttctt 229
|| ||||||||||| |||||||||||
Sbjct: 370 ctctccctcccaacctccctccttcccccctctcttcctttctttcttcctttctttctt 429
Query: 230 tctttctttctttctttctttctttctttctttctttctttctttctttctttcatattt 289
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcttcctttctttctttctttctttctttctttctttctttctttctttctttcatattt 489
Query: 290 ttgcttcacagagcctcagtatttgtttaagggacctaactaatgtctcagccaacactg 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 490 ttgcttcacagagcctcagtatttgtttaagggacctaactaatgtctcagccagcactg 549
Query: 350 ccctccttcctcactgtggctgcctgtccactggctaacctccatactgccttagtccag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ccctccttcctcactgtggctgcctgtccactggctaacctccatactgccttagtccag 609
Query: 410 acagcatgccctttatttcttctctcctttcctctttccttccaggcagctacaggattt 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acagcatgccctttatttcttctctcctttcctctttccttccaggcagctacaggattc 669
Query: 470 acagcttgcttgccctgaggttttccttttaaagtctaacacact 514
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 acagcttgcttgccctgaggttttccttttaaagtctaacacact 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 178
Number of extensions: 42
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_k05.g1 MSMg01no429_k05.g1 CHROMAT_FILE:
MSMg01no429_k05.g1 PHD_FILE: MSMg01no429_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:11 2005
(512 letters)
>mm_chr11_38115293_38116209
Length = 917
Score = 969 bits (501), Expect = 0.0
Identities = 511/517 (98%), Gaps = 5/517 (0%)
Strand = Plus / Minus
Query: 1 ttctattgtgagcctctttctatgaacatctcatttaaagatagagaaacctttaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttctattgtgagcctctttctatgaacatctcatttaaagatagagaaacctttaaatta 658
Query: 61 aatgttttgctggtgtgggtcataaaacagtcataagtattgaccaaagaaaaagaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aatgttttgctggtgtgggtcataaaacagtcataagtattgaccaaagaaaaagaaaga 598
Query: 121 aaagaaaaactattctattgcagagatgaagacatacacatgtatgtgtgacctattgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaagaaaaactattctattgcagagatgaagacatacacatgtatgtgtgacctattgct 538
Query: 181 tgccatacaaatcccttccacccatcactgttcacatagattatgcaccagcaggagaca 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgccacacaaatcccttccacccatcactgttcacatagattatgcaccagcaggagaca 478
Query: 241 gagattaatgaagaggaacttatcaaggcctcttttgttttccttgctatcaattgtagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gagattaatgaagaggaacttatcaaggcctcttttgttttccttgctatcaattgtagc 418
Query: 301 ttatgcaaccactccacatgaatggagagcctgcgtttcttctctgtttgcgatcctctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttatgcaaccactccacatgaatggagagcctgcgtttcttctctgtttgcgatcctctt 358
Query: 361 tctttcttt-----tttttttcctcaagtgccaaacagttttcatatgttaaaagagata 415
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctttctttctttctttttttcctcaagtgccaaacagttttcatatgttaaaagagata 298
Query: 416 agattttatgaaacaggaaaataacttcattttttttgcttgactcttaggcataaattt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agattttatgaaacaggaaaataacttcattttttttgcttgactcttaggcataaattt 238
Query: 476 tgtaaatactagataataaatcatagagcagggaata 512
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgtaaatactagataataaatcatagagcagggaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 917
Length adjustment: 10
Effective length of query: 502
Effective length of database: 907
Effective search space: 455314
Effective search space used: 455314
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
