BAC Information

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BAC

Clone NameMSMg01-429M03
Chromosome11 (Build37)
Map Location 93,068,368 - 93,213,515
singlet/doubletdoublet
Overlap geneCar10
Upstream geneLOC382545, LOC100039286
Downstream geneLOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429M03.T7 (MSMg01no429_m03.b1)MSMg01-429M03.TJ (MSMg01no429_m03.g1)
ACCAG522411AG522412
length738743
length of high quality
(start - end)
543 (61 - 603)589 (67 - 655)
definitionCHROMAT_FILE: MSMg01no429_m03.b1 PHD_FILE: MSMg01no429_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:20 2005CHROMAT_FILE: MSMg01no429_m03.g1 PHD_FILE: MSMg01no429_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,213,186 - 93,213,515)(93,068,368 - 93,068,956)
sequence
GGGCCGCTAAACGACTCACTAATTCAACACCATCCGCGGAATTCCTCAGA
TTTCAATCTTTGGGCAGGAGCATCCTCTGTTGTGAGGTGTTCTCTGATCT
GCAGAATGCTTGCCGGAATCACTAGATATACTCATTAGATCCCAGTAACA
GCTTCTGGCTAGACTCTAACAACCAAAAACATTTTCACATTGCCAAATAC
TGCTTGAGGGCCCCAACTGCTTTCAGTTGGGAAGCAGTGCATTAAGACAA
AACACACATGGGGCTAGGAATTGGGTCAGTTGGTAGAACAACTGCCTAGT
GTGCATATAGTCTGGCTTGATCCCAAGCTCAGCACATAATGAACATGGTA
GCCTATCTGCAATTTCTCCAATCATGAGACAGAGACAGGGGCATCAGGAG
TTCAAGGTCATCCTCCGTGATATAATGAGTTTGAATTCAGTATAGGATAC
AGGGACCCTGCCTAAGGAAACACACACAAAAGAGACAACCACATAGGCAA
ACAGACACACACAGACACAGATACCTATACCTGATAGGGCTATTGTGAAT
ATCTAAGAGATTAAAAGCAGGTAAGGATTTCAATACTGTTCTTGGCTTAA
GACAAAGGATCAGTAAATGGCTGCTGCTATTATAATAATTAAACCGTCTC
AATTAACCTGCTCCATCTTTATTTTTCCTTTTAAAAACACATAGCATGCA
TTCTTTTGTGATACACTAACACAACCTTTCACCTCCTC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCACTCGTTCCTACTTTGTGAGAGAGTAAATAG
ATGCTCATCAATAAAGTTGTATTAGTTACTGTTCTGCTGCTATGATAAAA
CACCCTGACAGAAAGCAGCTTGGAGGAGAGTTTATTTTTGTCCTACAGTT
TCAGTGGAATAGAGTCTTTCATGGCAGGAAAAATATAGCATCAGAAACCT
GAGGCCAGCCTGACAGTCTGTAACACAGTAATTGGGATCAGATTATAATT
CTCATAACCTGTCCCCAGTGACATACTTCCTACAGGAAGTCTTCACTTCC
TAAATGTTCCGTAACTTTCCCCCACAATCCACGAGTCCATCTGAGGAACC
TACTGTTCAAGCATCGTGTATAAGAAGCGTTTCACTTTTAAACCCCAGCA
TAAACATAGATAATTTACTTAGGAAGATTTTTAATAACTAACTCAGTATC
TTGAACAGTTACCCAATTAATAACTTTGCCTCTATAGTAAGCTTTGGTTG
AGTGCATTTCCATAGATCTGACTTTGCCAACCAAGTAGCTAAACTTATTT
ACACCAAGAAACTCATTCATATTCTCACAAACAGATGGTAAAAAGAGAAG
AAAAGAANAGAAAATTTAAGGGGCTTGGCATTATATTTCTTTACACTTAA
AAATATCTAAAGCTGAACTTCTTTTCCTACCATTGATAATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_m03.b1 MSMg01no429_m03.b1 CHROMAT_FILE:
MSMg01no429_m03.b1 PHD_FILE: MSMg01no429_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:20 2005
         (543 letters)



>mm_chr11_93212576_93213518
          Length = 943

 Score =  592 bits (306), Expect = e-173
 Identities = 324/330 (98%)
 Strand = Plus / Minus

                                                                       
Query: 214 ggtcagttggtagaacaactgcctagtgtgcatatagtctggcttgatcccaagctcagc 273
           |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 940 ggtcagttggtagaacaactgcctagtgtgcaaaaagcctggcttgatcccaagctcagc 881

                                                                       
Query: 274 acataatgaacatggtagcctatctgcaatttctccaatcatgagacagagacaggggca 333
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 880 acataatgaacatggtagcctatctgcaatttctccaatcatgagacagagacagggata 821

                                                                       
Query: 334 tcaggagttcaaggtcatcctccgtgatataatgagtttgaattcagtataggatacagg 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tcaggagttcaaggtcatcctccgtgatataatgagtttgaattcagtataggatacagg 761

                                                                       
Query: 394 gaccctgcctaaggaaacacacacaaaagagacaaccacataggcaaacagacacacaca 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gaccctgcctaaggaaacacacacaaaagagacaaccacataggcaaacagacacacaca 701

                                                                       
Query: 454 gacacagatacctatacctgatagggctattgtgaatatctaagagattaaaagcaggta 513
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gacacagatacatatacctgatagggctattgtgaatatctaagagattaaaagcaggta 641

                                         
Query: 514 aggatttcaatactgttcttggcttaagac 543
           ||||||||||||||||||||||||||||||
Sbjct: 640 aggatttcaatactgttcttggcttaagac 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_m03.g1 MSMg01no429_m03.g1 CHROMAT_FILE:
MSMg01no429_m03.g1 PHD_FILE: MSMg01no429_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:20 2005
         (589 letters)



>mm_chr11_93068168_93069156
          Length = 989

 Score = 1108 bits (573), Expect = 0.0
 Identities = 585/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccactcgttcctactttgtgagagagtaaatagatgctcatcaataaagttgtattagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccactcgttcctactttgtgagagagtaaatagatgctcatcaataaagttgtattagt 260

                                                                       
Query: 61  tactgttctgctgctatgataaaacaccctgacagaaagcagcttggaggagagtttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactgttctgctgctatgataaaacaccctgacagaaagcagcttggaggagagtttatt 320

                                                                       
Query: 121 tttgtcctacagtttcagtggaatagagtctttcatggcaggaaaaatatagcatcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtcctacagtttcagtggaatagagtctttcatggcaggaaaaatatagcatcagaa 380

                                                                       
Query: 181 acctgaggccagcctgacagtctgtaacacagtaattgggatcagattataattctcata 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 acctgaggccagcctgacagtctgtaacagagtaattgggatcagattataattctcata 440

                                                                       
Query: 241 acctgtccccagtgacatacttcctacaggaagtcttcacttcctaaatgttccgtaact 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctgcccccagtgacatacttcctacaggaagtcttcacttcctaaatgttccgtaact 500

                                                                       
Query: 301 ttcccccacaatccacgagtccatctgaggaacctactgttcaagcatcgtgtataagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcccccacaatccacgagtccatctgaggaacctactgttcaagcatcgtgtataagaa 560

                                                                       
Query: 361 gcgtttcacttttaaaccccagcataaacatagataatttacttaggaagatttttaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgtttcacttttaaaccccagcataaacatagataatttacttaggaagatttttaata 620

                                                                       
Query: 421 actaactcagtatcttgaacagttacccaattaataactttgcctctatagtaagctttg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 actaactcagtatcttgaacagttacccaattaataactttgcctctatagtgagctttg 680

                                                                       
Query: 481 gttgagtgcatttccatagatctgactttgccaaccaagtagctaaacttatttacacca 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgaatgcatttccatagatctgactttgccaaccaagtagctaaacttatttacacca 740

                                                            
Query: 541 agaaactcattcatattctcacaaacagatggtaaaaagagaagaaaag 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaaactcattcatattctcacaaacagatggtaaaaagagaagaaaag 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)