BAC Information

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BAC

Clone NameMSMg01-430C03
Chromosome11 (Build37)
Map Location 20,607,446 - 20,607,816
singlet/doubletsinglet
Overlap geneAftph
Upstream geneGlns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953
Downstream gene1110067D22Rik, LOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430C03.T7 (MSMg01no430_c03.b1)MSMg01-430C03.TJ (MSMg01no430_c03.g1)
ACCAG522698AG522699
length825773
length of high quality
(start - end)
242 (73 - 314)373 (78 - 450)
definitionCHROMAT_FILE: MSMg01no430_c03.b1 PHD_FILE: MSMg01no430_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:50 2005CHROMAT_FILE: MSMg01no430_c03.g1 PHD_FILE: MSMg01no430_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGTCTCTATAGTTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGATTTCCAGAAGCCACTGGCTCAGAAATTTGTGGGGCG
GTGGGCTATGAAAGGCAGCCTGGTTTCTGGCTGAGCTAGGTTTGAAACCC
CAGTGGTCCCACAGGTGATCCTGCAAGGGACGGTAGGCATTTTGCCATGC
TCCTGGACACCAGACCCCTGATACGAGGCAGTGATGGCCATAGGTCTGTG
GCCATCACTCACTTAAGGGCAACACCACAAGCCCCTGCACAGACAGAAAC
CATGACCACAGTCATGTATCTTCTAGACAGATCTCCATTTTAATGAGGTA
CCTAAAGATCTGAAGGGCTTATCCATTAACTTCCCTTCCCAGACACTCCT
CCCGAAAAAGGTATTTAACCTCACTCCCGCCTCTATAAAGGCGGTATTGT
CTTCCTCCTTTCCCACCCTCCGCCATTCCATTTTATGCTCTCACTTCCTC
TTCACCGTTCCCTTTTCCCCGCTCATCCCCTTTTGCCCCATTCCCTGTTT
GTCTCCCCTTTTCTCTTATATCTTTCCCCTCCTTTTTTCCTCACTTTTAT
CTTATCCTCCTTATATTCTCCCCCACCTCCTCTATTCCTCTTTATCCTCC
CTTTTTTCCCCTGCCTTCGCCACTTTTTTTCGCCTTCTTTTCTTCCTTTT
TCCCTTCCTCTTTTTTTTCCTTTCCCCTCTTTTTTCCCACTTTTTCTCCC
CTTTCCCATCTTCACCTTTCCTTTTATTTCTCCCCCTCGTTTTTTATTCC
CGTTGCACCTCCTCCTTTTCTTCTT
TTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGTTCAAGTAAGAGACTCTGC
CTTAGTATGTTAGGTGGAGAGCAATTGAGGCTACCTGATTATCAACTTCA
GGTCTCCACATGCACATGCAAACACAGATACATGTGTCCTACCTATATAC
ATGCATACACACACTACATACACATGTAAAAAAGTTTAGAAAGAAAACCC
ATCAAAAGTATATTTTAGAAAGAGTTAAACATAAACATAATCTTCCATTT
AAAACAACACATGATCTATAATGGAATATAAAAATGTCTCATGTAAAGAC
ATGAAGGATATATATTATGAATATTACATAAATATGCACCCCCTAAGATT
ACAACACCAAATCTTTAAAATATTTAGGGAGTTTGAAGAGACTGCTCACC
AGTTAGGTCTTGCTCTTGTAGAGGACCCAGATTCAGTTTCCAGCACCCAC
CTGTAACTCCTGTTCCAGCATCACTGAACAATTCCTCTCAGCTCTGTGAC
ACCCTATACCTTTGCATTTTTTCCCTTCCCTTTTCCTTCCTTTTCTTTTT
TTAATTTTCTCCTTTCTTTTTTTTATTCTATTTCACTCACCTCCCCTCAT
CCCTGATTCTACCCCCCTCCTTTAGTTTATATTTATAACCTCCGGTATCC
TTCTCCCTCTATCTTCTCAACTTTCCTTTTCTCACTTTTTATCCTTCTCG
CCCTACCCTCATCCCCAAACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_c03.g1 MSMg01no430_c03.g1 CHROMAT_FILE:
MSMg01no430_c03.g1 PHD_FILE: MSMg01no430_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:50 2005
         (373 letters)



>mm_chr11_20607246_20608018
          Length = 773

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggttcaagtaagagactctgccttagtatgttaggtggagagcaattgaggctacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggttcaagtaagagactctgccttagtatgttaggtggagagcaattgaggctacctg 260

                                                                       
Query: 61  attatcaacttcaggtctccacatgcacatgcaaacacagatacatgtgtcctacctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatcaacttcaggtctccacatgcacatgcaaacacagatacatgtgtcctacctata 320

                                                                       
Query: 121 tacatgcatacacacactacatacacatgtaaaaaagtttagaaagaaaacccatcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatgcatacacacactacatacacatgtaaaaaagtttagaaagaaaacccatcaaaa 380

                                                                       
Query: 181 gtatattttagaaagagttaaacataaacataatcttccatttaaaacaacacatgatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatattttagaaagagttaaacataaacataatcttccatttaaaacaacacatgatct 440

                                                                       
Query: 241 ataatggaatataaaaatgtctcatgtaaagacatgaaggatatatattatgaatattac 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataatggaatataaaagtgtctcatgtaaagacatgaaggatatatattatgaatattac 500

                                                                       
Query: 301 ataaatatgcaccccctaagattacaacaccaaatctttaaaatatttagggagtttgaa 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaatatgtaccccctaagattacaacaccaaatctttaaaatatttagggagtttgaa 560

                      
Query: 361 gagactgctca 371
           |||||||||||
Sbjct: 561 gagactgctca 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)