BAC Information

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BAC

Clone NameMSMg01-430I15
Chromosome11 (Build37)
Map Location 103,959,437 - 103,959,682
singlet/doubletsinglet
Overlap genenone
Upstream genePlcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream geneCrhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430I15.T7 (MSMg01no430_i15.b1)MSMg01-430I15.TJ (MSMg01no430_i15.g1)
ACCAG523010AG523011
length781803
length of high quality
(start - end)
366 (72 - 437)246 (80 - 325)
definitionCHROMAT_FILE: MSMg01no430_i15.b1 PHD_FILE: MSMg01no430_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:26 2005CHROMAT_FILE: MSMg01no430_i15.g1 PHD_FILE: MSMg01no430_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCCAGTTACGGTGGTGTACAACTTTAATCCCAGCACTTGAAA
GACAAACGTAAGAAGACCACTGAGTTGGAGGCCAGCCTGGTCTACACAGT
GAATTCCATCTAGCTAGAGCTCCCTCAAGATAGAGGAAACAAACATAGGC
TGTGGCAATCTACAACTCCAGGAACAGAGAAATCACTTGAAAATAAATAA
GACTAGAGGTAGCAACAACAGGGCTGGTGAGATGGCTCAATGGGTAAGAG
CACTGACTGCTTTTCCGAAGGTTCTGAGTTCAAATCCCAGCAACCACATG
GTGGTTCACAACCATCCGTAATGAGACCTGGCGCCCTCTTCTGGTTCGTC
TGAAGTCAGCTACATGGGTACTTATGTATAATAATAAATAAAAAGAGGTA
ACAACATCAATCTTTTTCCTTTTTTAATCCATGTTTTGGTTGCGAGCTTA
TCCTTGATCAGCCGAAACATTTTTCCCACCTGACTGCTTACCTTAATGTA
CCTGGATGGTTTTCCCTTATCCCCTCTATTTGCCCTTTTACCTCTCTGTT
GTTTTTCACCCGCTCTCTCTTATCCCCTTGTATCTGTTTTTCCCCCTGTC
CCCTTTTATTCCCTTCCTTTTTACTTCGCCTTAATTTTTCTTGTTTCCCC
CTTTTACTCCCTTATTACCTCTTCTTTTCTTTCCATCCCTTTTTTCCCTC
TCTTATTATCCATTTTCCTCTCCTACTTCTC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCGGGGCTCTGTCCCCAGG
CCCAGTGTGTGGTAAGCACTGTGCATGCAGGGACCAAATGAACTTCTCTT
GCTCACCATACCTGTTTCAGCACCCTTCCCTACCAGTACCTGCAGAGAGA
CACAGCGGGAGGCAGGAGGCGGGAGGCGGGAGGCGGGCCGCCACGAACTT
GTTCATAAAAGCCGAGAGCCCACGCTTGCACTGTGTTACTTTAAATAACA
TCCGAGTGGGTCTGTTTGCTTGGTCTTCTTGACCCCTACAAAATACCACA
CATGTCAGACAGCAAAGTAGGCTCGGGATGTGGAGACAGCATTCTAGGCT
CCTCAGGACCCTGGCAGGAAGCTGACAGCTGTANAACTGTCCCTGACAAT
GTCACCCACACTTACTGACACTGCCAGCAGAAGAAGGAGTTGTATATCGT
GGAGGTAATTGGACCCTATCCTGATTACCCTTCTTTTGGTGCATAGTTTC
CGTACTAGTTAATTTTAATCCCCCCCCCCTCTTCACGTTTTTACATCCTC
CCATATTCATTCCTATTAATTAAAATCTCTCTCTGCCCCTCCCTATCTTA
TTATTACTAATAAACTAACTTTCTTTTTTTTCGTTCTCGTTCCGGCCGCG
GCTACCTTTTATATGTGAAGACCCGCACCCCGCCCCTCTCATACTTCTTA
ATATCCACAGCCGCCTTCTCACCTTCGCCCCCCATCTCTCCCTTCACAAC
GAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_i15.g1 MSMg01no430_i15.g1 CHROMAT_FILE:
MSMg01no430_i15.g1 PHD_FILE: MSMg01no430_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:26 2005
         (246 letters)



>mm_chr11_103959237_103959882
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcggggctctgtccccaggcccagtgtgtggtaagcactgtgcatgcagggaccaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 actcggggctctgtccccaggcccagtgtgtggtaagcactgtgcatgcagggaccaaat 387

                                                                       
Query: 61  gaacttctcttgctcaccatacctgtttcagcacccttccctaccagtacctgcagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaacttctcttgctcaccatacctgtttcagcacccttccctaccagtacctgcagagag 327

                                                                       
Query: 121 acacagcgggaggcaggaggcgggaggcgggaggcgggccgccacgaacttgttcataaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acacagggggaggcaggaggcgggaggcgggaggcgggccgccacgaacttgttcataaa 267

                                                                       
Query: 181 agccgagagcccacgcttgcactgtgttactttaaataacatccgagtgggtctgtttgc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agctgagagcccacgcttgcactgtgttactttaaataacatccgagtgggtctgtttgc 207

                 
Query: 241 ttggtc 246
           ||||||
Sbjct: 206 ttggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)