BAC Information

Click to search

BAC

Clone NameMSMg01-430L16
Chromosome11 (Build37)
Map Location 116,553,974 - 116,554,291
singlet/doubletsinglet
Overlap geneSt6galnac2
Upstream geneGrb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik
Downstream geneLOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430L16.T7 (MSMg01no430_l16.b1)MSMg01-430L16.TJ (MSMg01no430_l16.g1)
ACCAG523154AG523155
length795812
length of high quality
(start - end)		276 (46 - 321)321 (80 - 400)
definitionCHROMAT_FILE: MSMg01no430_l16.b1 PHD_FILE: MSMg01no430_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:43 2005CHROMAT_FILE: MSMg01no430_l16.g1 PHD_FILE: MSMg01no430_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAAAATTCATTAATTCATCTAAACAATATTATCTTTAAAAATT
TATCTTCTTGTTGCTCTGCGGGAAACTTGCCCAACAGAGTGGGCTATCTC
CCAAGAAGTAATCACACCAGGCTGTAGACAATGAGGGTCTCTCGGTGTCT
ACTCACACCATGTCAGGTGTATGAGGAAGATAACGATGACAAAGACGAGC
AGGCACATCAGTAGCAAGAAGCTATCCTGGGACGAAGCCCCTGGGGCTGT
GCCTCTCCAGGGTACACCCAGGGCAGCATAGCAAACCAGTGGGCCATCTC
CAGGAAGCTCATCTGCCTACCGAAGCTTGTCCTGCATGGTATCAGCCACA
TGTCTGGCCATGTCTCAGAAGGCATAAGATATCATTTCCTGTGGAGCCAG
CGAGCTATGAGAATATCGTAGTCGGCCCAGATTAAGAGTGTGGTTTAGAT
GTGTTCCATCCTAGATAATCCTCCTCCCTGATATGTACCTTAGTATTACC
TGTTGTCCTTGCTCACCTTTCCCATTTTTTTATTTCCCCTGTTTCCCTCT
CCTTTTGCCCTTTTGGAACAATGGTTCTTTTTTCTGTGTATGTCCTTTTC
CTCCTTTCCTCTTTACCTGGTATCTCTCCTTTCTTTCTTCCTTTTTTCTC
CTCTCATTATCCTTTTTGTAGTGCTCTTGATTTCTTTTTTACTGTTTTTT
TCTCATTATTCTTTTTTCTCCGTTTCCATCGTGCTCTTGTTTTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGAATAGATGGCTAGGT
CCCCCCTAAGATGCAGTGAGAGCCCCCTTGGACACTGCAGGCCCAGCCTC
TCTCCTACCTGACTGTCACTTGGCCCTGATCACAAGGATGCTCATCTTCT
GGCCATACTCAGAAAGCCACCTACCTTGCTGGACTACCTACCCTCCTCCT
ACAGCCAGGTTGAACCCTAACCTGCCCCTTCCTCCCTCACACCCAGGTTT
TACTGTACTGTAGCAAACCCCAGCAAATACAAGGAAAAGGACGGGCTTTC
CGTTCCTAGCAGATGTTGTCAGGGGTTGTTGTCGTCTTAGTTTTAGTACT
GGGTACCNNACCCCAAGACTTCATCCATGTGAAGCAAACACTCTACTCAC
TGAACTATATTCCCCGGCTTCCTATTTGATTTTGCATCGGATACCGCCCT
TCCTGATAACTAACACGTTTTTGTTTTCGTTCCATCCCATTTTACTCGCG
TGTTCTTCACCCCTCCTCAAATTCATTCCTCCCCCCCCCCCTTACTCCTC
CACCCCGATCTATTCCACCTTTCCCCTTAACATCTCCCCCCCCCTTTACT
ACCCTATCTTACAACCCCTCCTCCCTCCTCTGCCCCCTATCTACCCTCTT
CCTTTTCCCCGCTCCCACGAAATCCCCCCAAATCATTCCTCCTTTCTTTT
TCTCCCGATAGCTATAGCGGCCCGCTTTCTTCTCTCCGTTTATCGCCCCG
CCTATCCACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_l16.g1 MSMg01no430_l16.g1 CHROMAT_FILE:
MSMg01no430_l16.g1 PHD_FILE: MSMg01no430_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:43 2005
         (321 letters)



>mm_chr11_116553774_116554491
          Length = 718

 Score =  567 bits (293), Expect = e-166
 Identities = 313/321 (97%), Gaps = 3/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtgaatagatggctaggtcccccctaagatgcagtgagagcccccttggacactgca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgaatagatggctagatcccccctaagatgcagtgagagcccccttggacactgca 260

                                                                       
Query: 61  ggcccagcctctctcctacctgactgtcacttggccctgatcacaaggatgctcatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcccagcctctctcctacctgactgtcacttggccctgatcacaaggatgctcatcttc 320

                                                                       
Query: 121 tggccatactcagaaagccacctaccttgctggactacctaccctcctcctacagccagg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccatactcagaaagccacttaccttgctggactacctaccctcctcctacagccagg 380

                                                                       
Query: 181 ttgaaccctaacctgccccttcctccctcacacccaggttttactgtactgtagcaaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaaccctaacctgccccttcctccctcacacccaggttttactgtactgtagcaaacc 440

                                                                       
Query: 241 ccagcaaatacaaggaaaaggacgggctttccgttcctagcagatgttgtcaggggttgt 300
           |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ccagcaaaaacaaggaaaaggacaggctttcagttcctagcagatgttgtcaggggttgt 500

                                
Query: 301 tgtcgtcttagttttagtact 321
           ||||   ||||||||||||||
Sbjct: 501 tgtc---ttagttttagtact 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 718
Length adjustment: 9
Effective length of query: 312
Effective length of database: 709
Effective search space:   221208
Effective search space used:   221208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |