BAC Information

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BAC

Clone NameMSMg01-430M03
Chromosome11 (Build37)
Map Location 120,781,410 - 120,781,832
singlet/doubletsinglet
Overlap geneCcdc57
Upstream geneBaiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, LOC100043454
Downstream geneSlc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430M03.T7 (MSMg01no430_m03.b1)MSMg01-430M03.TJ (MSMg01no430_m03.g1)
ACCAG523175AG523176
length805795
length of high quality
(start - end)
---424 (80 - 503)
definitionCHROMAT_FILE: MSMg01no430_m03.b1 PHD_FILE: MSMg01no430_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:46 2005CHROMAT_FILE: MSMg01no430_m03.g1 PHD_FILE: MSMg01no430_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCTAGACTTTTCTCTGAAGAAAAGAATTTCAGGACTAGCCAA
TATACATGCCGAGTTAGCAAGCTTACAGGCCAGGAGGAAAGACAGACCCG
CTGAGCGTAGTAACATGCCAAGAATCCCGTCACTAGGAAGCTGATGACGG
ATGCCTGCTCTGTGTTCAAGCCCAGTCTGGACTACAGAGAGAGTTTCAGG
CTCTTCCGATCTACAGTGTGAGAAAACCACACAATGTTCCCTTGACCAGT
CCCATAGCTAGAACTATCCTGGCCCTCTTTTATGTTTTGATCCCTGTACA
ATTAATCATTGCCCTGATCATTCTCCGACCTTGCGCGTATGTGTGTGCTG
CTTTTACATCTGCCTGTTCTGCCTCTTGCCCCCTTTCTTGTTCTTCCTCA
CCTGTTTCCCCCCTTTCCGCCCTTCTTCTTCGTCTTTTTTTATGCGCTCC
TTTTCTTTTTCGCCTTGCCCTTTCGCCCCCCATTTCCCCTTTTTTTCCCC
TTCCCCTTTTCTCTCCCTCTCTCTTTTCTTTTTTCCCTCCTTTTTTTTCC
CCTTTCTTCTTTCCCTTCTTTTTCCCCCCCCTCCTCTTTTTCCCTCTTGT
CTCTTATTTTCCCCCCTTTCTCTCTTTCTTCCGCCTCCTCTGCCTTCTCC
TATCTTCTTTTTTCTTTCCCTCCTTTTTTCCCACTTTCCCACACTCCCGT
CTCTTCTCTACCTTGTTTCTCCCTTTATTTTTTCATTGTCCCACCCTTAC
CCTCT
CTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGTCAGGACTATATA
ATTATGAAATGGAGGGGTTAATCACTGAAAGATGCCAATATTTAGAAAAC
CCAAGGGAAACACAGGGAATCTCAGCAAAGAAGAGATACAACAACAAATC
AAATAGAAACTTGATAACTAAAGTACAAATAGTACCACATCACTACCCCT
TTAATCAGAATCCCAGCACTTGGGAGCCAGAGGCAGAGTGGCAAAGAGGC
AGAGATCAGAGAGGCAGAGAAGCAGAGGCAGGCAGATCTCTGTGAGTTCA
AGGCCAGCCAGGTCTACGTAGTGAGACTCTCTATCTCAAAACAACAACAA
TAAAAAAGATTTAAAAACTACTATAACCTAAATAAAAGTCTCACATCCTG
AGTATAATGTCATACTGAATATGGCAAAGGAGGGAATTGGTGAACTTGAT
ACAGACATTACATATCACATGACTGAATGGAGAAAAAATGAATTAAAAAT
ATTAGAAAAAGGAAATGGCGTCCGGCTATTGGTGGTCGCCCATTTTTTGA
CCTAATTATATTTTTTTACCTTCTGATCCTCCTTCTGGTCTACCTCCACT
AACTTTCCTGTCTGGCCTGGCTTTTACAACCTGCATCCTCCTGTTTTTAT
CATACATCAGCTGATCCCTGGCCGGCATCGGTCCTCCAACCAACCGATGA
GCCGCGGTCTATCCTATACCCTCCTATACCTCCCTTGCCCACGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_m03.g1 MSMg01no430_m03.g1 CHROMAT_FILE:
MSMg01no430_m03.g1 PHD_FILE: MSMg01no430_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:46 2005
         (424 letters)



>mm_chr11_120781210_120782033
          Length = 824

 Score =  754 bits (390), Expect = 0.0
 Identities = 416/426 (97%), Gaps = 5/426 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagtcaggactatataattatgaaatggaggggttaatcactgaaagatgccaat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 caggccagtcaggactatataattatgaaatggaggggttaataactgaaagatgccaat 260

                                                                       
Query: 61  atttagaaaacccaagggaaacacagggaatctcagcaaagaagagatacaacaacaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttagaaaacccaagggaaacacagggaatctcagcaaagaagagatacaacaacaaat 320

                                                                       
Query: 121 caaatagaaacttgataactaaagtacaaatagtaccacatcactacccctttaatcaga 180
           |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 caaataaaaacttgataactaaagtacaaatagtaccacgtcactacccctttaatcaga 380

                                                                       
Query: 181 atcccagcacttgggagccagaggcagagtggcaaagaggcagaga--tcagagaggcag 238
           ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 381 atcccagcacttgggagccagaggcagagtggcaaagaggcagagaggt-agagaggcag 439

                                                                       
Query: 239 agaagcagaggcaggcagatctctgtgagttcaaggccagccaggtctacgtagtgagac 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaagcagaggcaggcagatctctgtgagttcaaggccagccaggtctacgtagtgagac 499

                                                                       
Query: 299 tctctatctcaaaacaacaacaataaaaaagatttaaaaactactataacctaaataaaa 358
           |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 tct--atctcaaaacaacaacaataaaaaagatttaaaaactacaataacctaaataaaa 557

                                                                       
Query: 359 gtctcacatcctgagtataatgtcatactgaatatggcaaaggagggaattggtgaactt 418
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtctcacatcctgagtatgatgtcatactgaatatggcaaaggagggaattggtgaactt 617

                 
Query: 419 gataca 424
           ||||||
Sbjct: 618 gataca 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)