BAC Information

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BAC

Clone NameMSMg01-431I10
Chromosome11 (Build37)
Map Location 10,654,392 - 10,654,812
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382483
Downstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431I10.T7 (MSMg01no431_i10.b1)MSMg01-431I10.TJ (MSMg01no431_i10.g1)
ACCAG523764AG523765
length790763
length of high quality
(start - end)
417 (75 - 491)414 (70 - 483)
definitionCHROMAT_FILE: MSMg01no431_i10.b1 PHD_FILE: MSMg01no431_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:52 2005CHROMAT_FILE: MSMg01no431_i10.g1 PHD_FILE: MSMg01no431_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCTGGCGCCAAAAGAANNACCACAGTGNGCTATTTGTCGGNAATNC
NNNGNNTATTTCAGAACACCGGTAAATGGGGTTATTTGATTTTCTGGAGT
CCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCCCTATGGGAT
TTATTTGAAGAAAATCCAGACACAAGGGAGTTTTCAAGAACAATTGAAAG
TCATAATGACAGGATTGTAAAAGTTCAAGGAACTCAGTGAGTTGATTAAT
AAAGCCTGGAAAAAGCATGTACTACTAGAACCAGAGTTTTAAAATGAACA
AATTCATAGAATATTGCTTTTATATTCAAACCATCTTCAATAATCCTGGC
AATGGCAACACTGACTGTGGTAAATGAAGAAATACATGGGTTTGTTAACT
AACCACTTTTACGACCAGGCAGGGAGGACTTTGGGTTAAGCTGCCTTATG
AGCTTCAGTGTCAGTCACCCTGTGATGGAGAAGGGTTAGCAAAAGAAAGC
AGACTATCGCAAAGCAGAAAATGAAGAATAGCTTCCAAAATTCTCCATGG
CAGAGTCCAAGATAAGTGTTGTGTTTTCAAGCTGTTATGTTTTAAATACA
AGCATTCTTTCTTATTCCTGATTCCCCTATTTACGACCTGTCCGCAACCA
GAACCCCCCCTTGCTCTTTTTTATTCTCTCCCCCGATCCATTTCACCTCT
CGCCCTCAATATACCCCTGTATTCTCCTCCCATCTCTGACCATCTATTTT
ATATTCTTCCTCCCTNCCCTCCTCATATTTTTATTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTAGCTGTTCAAGTCATAAGACTAGATGAA
TCAGCAGTCCAAATCTGGTGTCAGAGTCCCATGGAAATCCTGAAAAGCTA
TCTGTCTTCAGTTCACATTAGAATGCTGAAGAGTATGTTTAAACAACAGC
AAAGGAATGAATTATAAAAGTCAAAGTTGGCAGTGAGAGTGAGGACAGGC
AGACAAAAAGCAAAAGACTCCCTCCCTCCCTCCTTCCTTCCTCCCACCCT
CCCTCCCTTCCTTATTAACTTGATGTATTTTATGGACTACCACCAAAAGA
TGTGACCCAAATCTTTTGACCTCAAATGATCTAGAATTAGACTGTGTTTC
CCACCTCAAATAATCTGAGGAAGAAAAATGCCCCACAGTTATGTCAGCTG
CTTGGGTTTTAGTTACTTCCAAATGTATGCAAGCTGACAACTGACATTAC
CCATTAAAGGTCTAATAGCAATCTTGAGACCACAATGAGTTAAGTTAGGT
CATTGTTTGTTCTCTTTGCCCCATTCAAGCGTGGATACCATGTTGCTTCT
TGTCATACACGTTTCTCATCCCTACTCCTCTTTTTTTTTTCCATTTCGTC
CCTTCTTTCATCTTTTTCTCTTCTGATTCTTTTTTCTTCCTTCCCTTTTC
ATTCTTACCCCTCTACTTCCTTCTTCCTTTTCCCTTTTCTCTTTTTTTTC
TTCCATTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_i10.b1 MSMg01no431_i10.b1 CHROMAT_FILE:
MSMg01no431_i10.b1 PHD_FILE: MSMg01no431_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:52 2005
         (417 letters)



>mm_chr11_10654192_10655012
          Length = 821

 Score =  741 bits (383), Expect = 0.0
 Identities = 410/421 (97%), Gaps = 4/421 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatggggttatttgattttctggagtccagcttcttgagttctttgtatatattggatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatggggttatttgattttctggagtccagcttcttgagttctttgtatatattggatat 260

                                                                       
Query: 61  tagtcccctatgggatttatttgaagaaaatccagacacaagggagttttcaagaacaat 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tagtcccctatgggatttatttgaagaaaatccaggcacaagggagttttcaagaacaat 320

                                                                       
Query: 121 tgaaagtcata----atgacaggattgtaaaagttcaaggaactcagtgagttgattaat 176
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagtcatagataatgacaggattgtaaaagttcaaggaactcagtgagttgattaat 380

                                                                       
Query: 177 aaagcctggaaaaagcatgtactactagaaccagagttttaaaatgaacaaattcataga 236
           ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 aaagcctggaaaaagcatgtagtactagaaccagaattttaaaatgaacaaattcataga 440

                                                                       
Query: 237 atattgcttttatattcaaaccatcttcaataatcctggcaatggcaacactgactgtgg 296
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattgctttgatattcaaaccaccttcaataatcctggcaatggcaacactgactgtgg 500

                                                                       
Query: 297 taaatgaagaaatacatgggtttgttaactaaccacttttacgaccaggcagggaggact 356
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 taaatgaagaaatacatgggtttgttaactaaccacttttatgaccaggcagggaggact 560

                                                                       
Query: 357 ttgggttaagctgccttatgagcttcagtgtcagtcaccctgtgatggagaagggttagc 416
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgggttaagctgccatatgagcttcagtgtcagtcaccctgtgatggagaagggttagc 620

            
Query: 417 a 417
           |
Sbjct: 621 a 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 821
Length adjustment: 9
Effective length of query: 408
Effective length of database: 812
Effective search space:   331296
Effective search space used:   331296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)