BAC Information

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BAC

Clone NameMSMg01-431M15
Chromosome11 (Build37)
Map Location 58,849,467 - 58,849,704
singlet/doubletsinglet
Overlap genenone
Upstream geneLarp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
Downstream geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431M15.T7 (MSMg01no431_m15.b1)MSMg01-431M15.TJ (MSMg01no431_m15.g1)
ACCAG523966AG523967
length751760
length of high quality
(start - end)
---238 (245 - 482)
definitionCHROMAT_FILE: MSMg01no431_m15.b1 PHD_FILE: MSMg01no431_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:15 2005CHROMAT_FILE: MSMg01no431_m15.g1 PHD_FILE: MSMg01no431_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGCTAAACGACTCACTAAATGCAGAGACAGCGCGGAATTCCTTATT
GTAGCTCTACTACAGGTGAGATGACAGCTCAGTTATTTGCTTAGAGCTGC
TGATGTATAGAGTTAATGTGCCTGTGAATGTGTTTCACCTTTTTGAAACT
AATTATGTTAACAAATGGTAATGCTTACAAATAAAGGCAAGACAGGCAGT
GGCGGCGCACACCTTTAGTCCCAGCACTTGAGAGACAGATTCTGGCAGAT
TTCTGACTTCGAGGCCATCTTGATCTACAGAGTGAGTTCCAGACAGCCAG
GGCTACTTAGATAAATCCCTGCCTCGGAAAAAAAGCAAAGAATGAATGAA
TGAATGAATAAGTAAATGAATAAGTGGAGAAACAATATACAGATGAGGTT
CAACATTTTAATTGCTGTAGTTCAAAAACTTAAGAGTTTTAACTTGAGTA
TGGATATAGACCTTGATTTGAGTGTGTGTGTTGGCCCAGGAAAGGTAGTT
CTGAACTGGCTTGTTTATCTTGAAGGCAGACTTGGGCATTGTATAAAGCT
CTCTTGTAAGATCTCATACACCAAATTTTGCTCAATGTCTGACTCAGAAG
AAATATTTCCGCAGTACCTACGAATTCTGCTGTAAAAAACTGTTTTTTTT
ATTCAAGATTTCTGTGGGCCCCCGTCCTCGAATTAACGCTTCCTATTCCT
CTCTGTCTAACCTCCGCCCCTATAAAAACTTTCCCTCGATTCCTATCCCT
G
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACTTTCCAAGTTCAGGAAGAGGGGGTCTCAAGACCA
TCGTGGTCACCTGTCCCCTGCGTGGCTGAGTCCTGGCCATCTGAGTCTCT
GCTCACTAGAGCAGTGACTGCAGTGATAATGATAGGGCTTGCAGCTCAGC
TCTGCTCAGTCCTTCAGGACACCCACCTCGGACCAGAAACCGGTCTGATG
AATAGGCAGCACCCACAGCATTGCTGATGTAGGCTGCATACTGGCCGCTG
TCCTCCCGAGTGACCGAGACAATCTCCAGGGTGTGCAGGGTCTTCTTGTC
AGTCATGCGGATGTGGTCAGACGTGGTCAGGGGCTGGCCATCTTTGAACC
AATACAGTTTGGGAGCTGGATAGCCTGAGGAAAACATCGGCAGGTGGTCA
CCCCAAGACCATCTCCCAGTGATAATAGAAGGCCCAGAGCAGAGGTCCCT
CAGAGGCCAAAGGGTAAGGACACACACATGACCACCCAAACAATGCTGGT
TGGGATCCCTCTCCAACTGTGGCTTGGAGGTCATGGCCTCTGATCTGTGG
GGCAGTGCCAATCCCCATCAACTGCTCACCTTTCACCTTGAGCTGAAATT
TGGCCCGGCGTGCCCCCGGGCCACTTTGTTATTCTTTTAAGATTCTTCAA
CCCTTGGGAAAGTTTCCCCCTTTTTCCTTCCTCCTTCTTCTGTCCCTCCT
GTGAATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_m15.g1 MSMg01no431_m15.g1 CHROMAT_FILE:
MSMg01no431_m15.g1 PHD_FILE: MSMg01no431_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:15 2005
         (238 letters)



>mm_chr11_58849267_58849904
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatgaataggcagcacccacagcattgctgatgtaggctgcatactggccgctgtcct 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacgaataggcagcacccacagcattgctgatgtaggctgcatactggccgctgtcct 260

                                                                       
Query: 61  cccgagtgaccgagacaatctccagggtgtgcagggtcttcttgtcagtcatgcggatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccgagtgaccgagacaatctccagggtgtgcagggtcttcttgtcagtcatgcggatgt 320

                                                                       
Query: 121 ggtcagacgtggtcaggggctggccatctttgaaccaatacagtttgggagctggatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcagacgtggtcaggggctggccatctttgaaccaatacagtttgggagctggatagc 380

                                                                     
Query: 181 ctgaggaaaacatcggcaggtggtcaccccaagaccatctcccagtgataatagaagg 238
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ctgaggaaaacatcggcaggtggtcaccccaaggccatctcccagtgataatagaagg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)