BAC Information

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BAC

Clone NameMSMg01-431O24
Chromosome11 (Build37)
Map Location 113,575,366 - 113,575,767
singlet/doubletsinglet
Overlap genenone
Upstream geneSox9, 2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e
Downstream geneCdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431O24.T7 (MSMg01no431_o24.b1)MSMg01-431O24.TJ (MSMg01no431_o24.g1)
ACCAG524080AG524081
length765776
length of high quality
(start - end)		402 (38 - 439)401 (70 - 470)
definitionCHROMAT_FILE: MSMg01no431_o24.b1 PHD_FILE: MSMg01no431_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:28 2005CHROMAT_FILE: MSMg01no431_o24.g1 PHD_FILE: MSMg01no431_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTCTC
ACCTGAGTTACACTGAATGGCTGAGAAGCACGTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATTCAAATCAAAACAACCTTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAATAATTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA
AGCTTGTACAACCACTCTGGAAGTCAGTCTGGAGGTTCCTCAGAAAATTG
GACATAATACTACCGGAAGATCCAGCAATACCTCTCCTGGGCATATACCC
AGAAGAAGTTCCAACTGGTAATAAGAACACATGCTCCACTATGTTCATAG
CAGCTTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCA
ACAGAAGAATGGATACAGAAAATGTGGTACATTTACATAATGGAGCACTA
CTCACCTATGAAAAAAACGGGATTATGAAATTCTTACACCAAGGGAGGCT
TCTGGGGAATACATTCTGATGGAGGTAACCCACCCCAAAAGAAATCCTTT
GATTTTATCCCCCGGAAATGGAAAATTTCCCCCAAACTAACAACACCCCG
AATCTTTTTGCTTATCCTCAACATCTCAAAAATGGCCAAACCCGCGGGTG
GCACCTTTTCCCCCTCCAAAAAGGATAAATTATCTTTTACGCGTTACTTC
GCCCATTCTCTTTTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGCTCTGGGCACCGACCCTTGCTTTTCAG
AATGGGGCATTTATAAAAAGGAAGGGAGGCGGCAGGGTGATGATTCATGG
GATTTGTAGCTGGAGTTGAAGGAAAACCCCGTCCGTAATGATGGTGATTA
GAAATTAATGCCACTGTGCTGCGACTTTGGTGTCCACTTTGCACCCATGC
ATTAATTAACAAAGGACAACACATGGGCAAGCTACAGGGCACAGAAGCTG
GATCTATGGAGGGGACATCCCTGGAGGGGAACCTGTCCCCCATCCCCAGA
GCTTCAGGTTAGCATTTTGTCTAGGCTCTGCCCCCACAGATACCTGGCAA
TGGCCAGGTGTGCCTGACTCACTATAAAAGGGGCTGCTCGCCCCCTCCTC
TCTCTCTTGCCTTCCTGCTCCCCCTGTCTCCCTATTCCCTTCTTTCCTCC
TCTATCTCCCATGCTCATGGGCCGGCCCTACTTTTTTTATCTTTCCCTGG
CTTTTTCTGGCCCTATAACCCCCTGGGCTCCCCCCCGCATGGCCTGGAAA
AAGGCTATTTTTTTTCTTATAAAAGTGCCGTGCCTCCTCCCCGTGTAGAT
TTTTGCTCTCGGGGGCCCAAGGCTCTCCTTCTTTTTTTTGGTCCCCCCCC
CCCTTGCGTCGGCGTTTTTATTCTTATATATTGCGTTCTCCTTTTCTCTC
TCCCATTATACTTCTCTCCTTTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_o24.g1 MSMg01no431_o24.g1 CHROMAT_FILE:
MSMg01no431_o24.g1 PHD_FILE: MSMg01no431_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:28 2005
         (401 letters)



>mm_chr11_113575296_113576096
          Length = 801

 Score =  716 bits (370), Expect = 0.0
 Identities = 394/402 (98%), Gaps = 1/402 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagctctgggcaccgacccttgcttttcagaatggggcatttataaaaaggaagggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaagctctgggcaccgacccttgcttttcagaatggggcatttataaaaaggaagggagg 413

                                                                       
Query: 61  cggcagggtgatgattcatgggatttgtagctggagttgaaggaaaaccccgtccgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cggcagggtgatgattcatgggatttgtagctggagttgaaggaaaaccccgtccgtaat 353

                                                                       
Query: 121 gatggtgattagaaattaatgccactgtgctgcgactttggtgtccactttgcacccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gatggtgattagaaattaatgccactgtgctgcgactttggtgtccactttgcacccatg 293

                                                                       
Query: 181 cattaattaacaaaggacaacacatgggcaagctacagggcacagaagctggatctatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cattaattaacaaaggacaacacatgggcaagctacagggcacagaagctggatctatgg 233

                                                                       
Query: 241 aggggacatccctggaggggaacctgtccccc-atccccagagcttcaggttagcatttt 299
           ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 232 aggggacatccctggaggggaacttgtccccccatccccagagcttcaggttcgcatttt 173

                                                                       
Query: 300 gtctaggctctgcccccacagatacctggcaatggccaggtgtgcctgactcactataaa 359
           ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gtctaagctccgcccccacagttacctggcaatggccaggtgtgcctgactcactataaa 113

                                                     
Query: 360 aggggctgctcgccccctcctctctctcttgccttcctgctc 401
           |||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 112 agggactgctcaccccctcctctctctcttgccttcctgctc 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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