BAC Information

Click to search

BAC

Clone NameMSMg01-431P14
Chromosome11 (Build37)
Map Location 85,269,161 - 85,269,585
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneAatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431P14.T7 (MSMg01no431_p14.b1)MSMg01-431P14.TJ (MSMg01no431_p14.g1)
ACCAG524107AG524108
length761769
length of high quality
(start - end)
496 (35 - 530)426 (66 - 491)
definitionCHROMAT_FILE: MSMg01no431_p14.b1 PHD_FILE: MSMg01no431_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:31 2005CHROMAT_FILE: MSMg01no431_p14.g1 PHD_FILE: MSMg01no431_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGGCGCTATACGACTCACTATATTCAGAGAATCCGCGGAATTCCAGGA
CATTCTCCGCTACACAGAGAAACACTGTCTCAAAAAAACAACAACAACGG
GCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGT
CCTGAGTTCAATTCCCAGCAGCCACATGGTGGCTCACAACCATCTGTAAT
GGGGTCTGGTGCCCTCTTCTGGTGTGTCTGAAGAGAGCAATGGTGGTGTA
CTCATATGCATAAAATAAATTTAAAACAACAACAACAACAACAACAACAA
CAGCAACAACAAAGAATCATAATGTAAAGCTGGGTATGGTGGTGTACGCC
TTTAGTCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAG
GCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGTCTACACTGAG
AAACCCTGCCTCGAAAAACAAAAAACAAAACAAAACAAAAGAATCATAAT
GTAAGTATCTTATGTCTGACTCCTGTAAAAGGGTCTCTCAGCCTCAAAGG
GGGCTTCGACCATTTGTTGGTACAGAGGATCTCTGACCTTGTAGAACTAT
GTTGCCTGGATGGCTGGTAACTGCCACACTTCCTAAAAAAAGAGTTCCTT
GTGTTCCCAGGAAAACCGGGGGCCCACCCACAAATCTTCCTCTCACCGGT
GGTATACAATGGCGCCCTTTAGTGAAGATAAAAGCGGATAATTTTTTACT
CTTCAATATAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCTGTGCACTCCTTCCTGTAGCTGACAGTAATGT
GTCACACCTTTTTGCTCCCTGCTCACCTGACTTTATCTACTGAGAGTTCC
TTCCTTGCCATCTGGTGTCCTGTTTCTTGTAAATGTAAAACTTTTCTACC
TCAGAATTGTATACACACCGGGGTTTTAGTTAGGCGCTTTTCATGATTTC
TGATGGATGACAGGGTGGAGTGTGGTGCGGAGAAGGCAAGCAGAACAATT
TATTGCCAGATCCTTATCTAGGACCAGAGCCCCGGCTAGTTAGTATTAAA
AATTCTTTTTGGTACTTTAAAAATTGTTTAGCATTTTATTCATGGACATT
ACATTTTGCTGGTATAGTTTTCGGTTATCTTTGTCTTTATTGACCCCTGG
GCACTAGGCTGTTTGTAGTGATTGTGTTTGATATGTGTGGCGACTGGAGC
GTCCTCCCATACTTGACCTATTATGTCTTTTCTCTTTTTTTTTATCTATT
CTGCCACTTTTCTACTCCGCATTTCCCCCTCACTTATTTTTCTCCCTTTT
TTCCCTATTTCTTTTCCTCATTTCTATCCTTTTCCTCGTTCTTTTCTCAT
CGTCCTTACCTGTATTTTCTCCCCTTTCTCCTTCTTTTCCCCCCCCTCTT
TATTCTCTCACTATCCTCGTTTCTCTTTGTCACTATTTTTGTCTTTTTTT
CCTTCCTTTCTCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_p14.g1 MSMg01no431_p14.g1 CHROMAT_FILE:
MSMg01no431_p14.g1 PHD_FILE: MSMg01no431_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:31 2005
         (426 letters)



>mm_chr11_85268961_85269786
          Length = 826

 Score =  783 bits (405), Expect = 0.0
 Identities = 420/425 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgtgcactccttcctgtagctgacagtaatgtgtcacacctttttgctccctgctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgtgcactccttcctgtagctgacagtaatgtgtcacacctttttgctccctgctca 260

                                                                       
Query: 61  cctgactttatctactgagagttccttccttgccatctggtgtcctgtttcttgtaaatg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgactttatctactgagagtttcttccttgccatctggtgtcctgtttcttgtaaatg 320

                                                                       
Query: 121 taaaacttttctacctcagaattgtatacacaccggggttttagttaggcgcttttcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaacttttctacctcagaattgtatacacaccggggttttagttaggcgcttttcatg 380

                                                                       
Query: 181 atttctgatggatgacagggtggagtgtggtgcggagaaggcaagcagaacaatttattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttctgatggatgacagggtggagtgtggtgcggagaaggcaagcagaacaatttattg 440

                                                                       
Query: 241 ccagatccttatctaggaccagagccccggctagttagtattaaaaattctttttggtac 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagatccagatctaggaccagagccccggctagttagtattaaaaattctttttggtac 500

                                                                       
Query: 301 tttaaaaattgtttagcattttattcatggacattacattttgctggtatagttttcggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaaaaattgtttagcattttattcatggacattacattttgctggtatagttttcggt 560

                                                                       
Query: 361 tatctttgtctttattgacccctgggcactaggctgtttgtagtgattgtgtttgatatg 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 561 tatctttgtctttattgacccctgggcactaggctgtttgtagcgattgtgtttgatctg 620

                
Query: 421 tgtgg 425
           |||||
Sbjct: 621 tgtgg 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)