BAC Information

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BAC

Clone NameMSMg01-432C23
Chromosome11 (Build37)
Map Location 66,618,711 - 66,756,688
singlet/doubletdoublet
Overlap geneA530088H08Rik
Upstream geneZkscan6, Dnahc9, Gm879, LOC668323
Downstream gene9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432C23.T7 (MSMg01no432_c23.b1)MSMg01-432C23.TJ (MSMg01no432_c23.g1)
ACCAG524266AG524267
length780785
length of high quality
(start - end)		432 (46 - 477)330 (75 - 404)
definitionCHROMAT_FILE: MSMg01no432_c23.b1 PHD_FILE: MSMg01no432_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:49 2005CHROMAT_FILE: MSMg01no432_c23.g1 PHD_FILE: MSMg01no432_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,618,711 - 66,619,135)(66,756,361 - 66,756,688)
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCTCACCTCACAAAATACACAATTTGAGGTTGTAACCCTGCAT
ATTTCAGAAGGAGACCTTATTTGAAGACAGGGTCTTCACAAAGATACCAA
AGTTAAAATGGGATCATTGAAATGGACTTGAATATGATATGACTCATGGC
CTTTCAACAAGGGGAAGTTAGACACAAAGATCTACACGAGAGGAAGGTGT
CATATGAACACACACAGAAGCCCAAGACAAGGACCTGGAGCAGAGTCTCT
CTCACAGTCCTCGAAAGGAGACTAGTCTACAGACTGGTTTTATCTTGAAC
CTGATTACAAGCTTTGAACTTCTGGAACTTCAGCAAAACCATTCAGTTTG
TTATGCTCTATTTGGACAGGCCAGCAAGCAAGCATAAGTGACCTGAACAG
CAACAACAACAAAATTTCATTTGCCAGAAGAATAAAAAGTTAAAGGAAAG
GAATAATTGAGTTTGAATGAAGAAAGGAAGCAGGTGTCCTTGGGCTTGTA
TTTATATAAAGTAGTTTATTTTGGAAAAATCTATTATCTAAAACTTCCCC
AAGTTGAGCCATGGAAATTGGTTGTAAAAAAAAAAGTTTACTTATAACAT
GGGCCTAAAACCCCCTATTTTGCTATAAAACCTTATTTTCCCCTACAAAA
AAGTTAAAAATTTCATGGTTGGGATTGGAGTTCAAAATTTCAAAATGTTC
ATGTTCCCAAACACTTTTGAATAACACCAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTATTTTAGGGAATGAACAGCAA
GCACTCTTTTGTATCTGTGTTCTTGCCTATCCACTGGCCCGAAGATAGAC
TTTGGGTTTCACACACCTTTGGCTATTGTGGATAATGATGCTCTAAACAT
GGATACTTGAGTATGATTTTTGTGCCCCTCCCAGACCCTTTTGGGTACAC
ATCCTGACCTGGAACTGTGGGATCATGGGATGTCCTTTCACATTCCTACA
GCAACCGAGGTTGTTTGGGGGTCTCTTTCAAATCTTCCCCAAGACTTTTT
TTTCTCCCTTTTTAGTTTTTATTGTTGTTCTACTGTGAAAGGTGGATTGC
TATGTTATTAAGCTGTTATTTTTACAGCACGCACTGCCATACCCCATTTA
TTTGTTTTTCTGCTGTCTCTCTTGCATGTGGTGGCTTGTTTTCTTGCATT
TACCACTCTCTGCTTCTCTCTTTCCTGGTCATATTTTGTTTTTTTTCCCA
TTTTTTTTTCCCTTTTCCTTTTCTTTTCTTTCTTTCTCCCCTCTCCCTTT
TTATTCTCCTTCCTTCTTTCCTTTTTCTTTTCTTTCCTCTCTTTTTTACC
TCTCTTCTTTTTTTTTCCCCGTCTCTCTTTCCCATTTCCTCCCTCCTCCA
AATCTTCTCATTCTTCTTTCGCCTCATTCTCCTTATTTTATTCTCCTGAT
ACCTTATTCTCATTTTTTATCCTATTTACCATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_c23.b1 MSMg01no432_c23.b1 CHROMAT_FILE:
MSMg01no432_c23.b1 PHD_FILE: MSMg01no432_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:49 2005
         (432 letters)



>mm_chr11_66618507_66619338
          Length = 832

 Score =  760 bits (393), Expect = 0.0
 Identities = 417/425 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcctcacctcacaaaatacacaatttgaggttgtaaccctgcatatttcagaa 64
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcttcctcacctcagaaaatacacaatttgaggtggtaaccctgcatatttcagaa 264

                                                                       
Query: 65  ggagaccttatttgaagacagggtcttcacaaagataccaaagttaaaatgggatcattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggagaccttatttgaagacagggtcttcacaaagataccaaagttaaaatgggatcattg 324

                                                                       
Query: 125 aaatggacttgaatatgatatgactcatggcctttcaacaaggggaagttagacacaaag 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 aaatggacttgaatatgatatgactcacggcctttcaacaaggggaagttagacacaaag 384

                                                                       
Query: 185 atctacacgagaggaaggtgtcatatgaacacacacagaagcccaagacaaggacctgga 244
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 385 atctacacgagaggaaggtgtcatatgaaaacacacagaagcctaagacaaggacctgga 444

                                                                       
Query: 245 gcagagtctctctcacagtcctcgaaaggagactagtctacagactggttttatcttgaa 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 gcagagtctctctcacagtcctcgaaaggagaccagtctacagactggttttatcttgaa 504

                                                                       
Query: 305 cctgattacaagctttgaacttctggaacttcagcaaaaccattcagtttgttatgctct 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 cctgattacaagctttgtacttctggaacttcagcaaaaccattcagtttgttatactct 564

                                                                       
Query: 365 atttggacaggccagcaagcaagcataagtgacctgaacagcaacaacaacaaaatttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttggacaggccagcaagcaagcataagtgacctgaacagcaacaacaacaaaatttca 624

                
Query: 425 tttgc 429
           |||||
Sbjct: 625 tttgc 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no432_c23.g1 MSMg01no432_c23.g1 CHROMAT_FILE:
MSMg01no432_c23.g1 PHD_FILE: MSMg01no432_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:49 2005
         (330 letters)



>mm_chr11_66755959_66756688
          Length = 730

 Score =  634 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Minus

                                                                       
Query: 3   tttattttagggaatgaacagcaagcactcttttgtatctgtgttcttgcctatccactg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tttattttagggaatgaacagcaagcactcttttgtatctgtgttcttgcctatccactg 671

                                                                       
Query: 63  gcccgaagatagactttgggtttcacacacctttggctattgtggataatgatgctctaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gcccgaagatagactttgggtttcacacacctttggctattgtggataatgatgctctaa 611

                                                                       
Query: 123 acatggatacttgagtatgatttttgtgcccctcccagacccttttgggtacacatcctg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acatggatacttgagtatgatttttgtgcccctcccagacccttttgggtacacatcctg 551

                                                                       
Query: 183 acctggaactgtgggatcatgggatgtcctttcacattcctacagcaaccgaggttgttt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 acctggaactgtgggatcatgggatgtcctttcacattcctacagcaaccgaggttgttt 491

                                                                       
Query: 243 gggggtctctttcaaatcttccccaagacttttttttctccctttttagtttttattgtt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gggggtctctttcaaatcttccccaagacttttttttctccctttttagtttttattgtt 431

                                       
Query: 303 gttctactgtgaaaggtggattgctatg 330
           ||||||||||||||||||||||||||||
Sbjct: 430 gttctactgtgaaaggtggattgctatg 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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