BAC Information

Click to search

BAC

Clone NameMSMg01-432D21
Chromosome11 (Build37)
Map Location 91,430,408 - 91,430,825
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903, EG664976
Downstream geneKif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432D21.T7 (MSMg01no432_d21.b1)MSMg01-432D21.TJ (MSMg01no432_d21.g1)
ACCAG524309AG524310
length814884
length of high quality
(start - end)
423 (44 - 466)55 (75 - 129)
definitionCHROMAT_FILE: MSMg01no432_d21.b1 PHD_FILE: MSMg01no432_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:54 2005CHROMAT_FILE: MSMg01no432_d21.g1 PHD_FILE: MSMg01no432_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTATATGGTGTCATCATATGGTGGATACAGATGAGGACAAGTATTT
AGGGAAAGAATAGGAGGGTCAGTCTACACCATCCCCTGACAGATCGCTAT
CGGTCCCTAGTAATGAGATACTTATTCTCTTTTCTAAGGAATGCCTTCTC
AATACTGCCTCAATGTCAACTGGATATCTATCTGCTTGGGAGTTCCAAAA
GACAACTTACATTAAAATCACAGCAGTATTGAAGCCATTATTTCCCATAT
ATGGACATGGGCAGCTTCATTCCCAGTCCTGACTGTCTCTAATGCAGAAC
CAGGAGGCTATCTAGATGATTTTAACTACAGTTACTGACTCGGCTCAATA
GCTTGCTTAAAGCATTAAAACATTCTGTATTTTTCTCTTTTACTTTTAAA
TTTATAAGATTACATTTATTTAAGATTAAAAAGGAAATGACATGAAAAAT
CACATTTCAAGAAAATGATAAAGGTTTGCTATGAGAAATTGCCTGGTTTG
AAGAATTTCTAAAGAATTGGTCCAATCAATTTCACCCATGACAGGGTTTG
TCTTTGAGAAAATATCTTTACCGTTTGGAGAATAAGCAAACTTTGTTATT
TGATTTTCTTTATGGAAGGGCCCCTTAATAATTGGTTTCTATGCTTCTGC
GAATATTTTTTCCCCTCTCCACTCACCTCTTAATTTACTCTCCCATTATC
CTCCTTCTTTTCCTCCTCTACGATTCCCCTGCTTTCTTTCTTCCTTATCT
TACTCTGTTATTTT
AATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGATTTGGCTTTTTATTTGAGAGC
ATAGCTTGTGTGTGTGTGTGTGTGTGTGTGTCCCCCNNCCTCCCCCCCCC
CCTTCCTCCCTCCTTCCCTCTTCCCCCTCCCCCCCTCCCCCCTCCCTCCC
CTCTCCTTCCCCCTTCGCCCTCCCCCCGCCCTCCCCCGTCCTCTCCTCCC
CTCCTCTCCCTTTCCTCTCCCCCCTCCTTTCCCCCCCTCTTCCCCCCCCC
CCTTTCCTTCTCCTCCCTCCCTCTCCTTTTTTTTCCTCTTCTCCTCTCTC
CTCCTTTTTTCCTTCTTCTTCCCTTCCCTCTTCCCTACCGCCCCCCCCCT
CCTCTTCCCTCCTTCCTCCCCTCCCCCCCCCCCCCCTTCCCCCCCTCTTT
TCTTTCCTTCTTCCCTCTTTCCTCCTCTCCCCTTCCTCTCCTCCCCCCCC
CACACCTTCTCCCTCTCCCTCTCTCTTTCCCCTTTTCCCCCTTCCCCCCC
TTCTTCTTTCTCCTCCCCTTTCCTTCTCTTTCTCTTCTCTTTCTCTCTCC
TTCTCCTTTCTCCCTCTTCCCTTTTCTCCCCTTCTCTCTCCTTTTCTTCT
CCCCTTCTCCTTCTCCTTTTCTCCCTCTCCTTTCCTTCTCACTACTTCTC
TTNTCCTCTCTCCTTTCTCTCTTTCCCCCCTCTCTTTATTCCCCTCCTTT
TCCCTCCCCTCTCCCTTTTCCTCTTCTTCCTTTCCCCTTCCTCCCCCCCC
TCTCTTTCCTCTCCCTCCCTCTCCCTTCCTCCCTTCTCCTCTCCTCCCCC
CTTCTCACCCTTCTTCCCCCTTCCACCACCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_d21.b1 MSMg01no432_d21.b1 CHROMAT_FILE:
MSMg01no432_d21.b1 PHD_FILE: MSMg01no432_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:54 2005
         (423 letters)



>mm_chr11_91430203_91431025
          Length = 823

 Score =  762 bits (394), Expect = 0.0
 Identities = 412/418 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctttatatggtgtcatcatatggtggatacagatgaggacaagtatttagggaaag 65
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 206 aattctttatatggtgtcatcatatggtggacacagatgaggacaagtatttagggaaag 265

                                                                       
Query: 66  aataggagggtcagtctacaccatcccctgacagatcgctatcggtccctagtaatgaga 125
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 266 aataggagggtcagtctacacccttccctgacagatcgctatcggtccctagtaatgaga 325

                                                                       
Query: 126 tacttattctcttttctaaggaatgccttctcaatactgcctcaatgtcaactggatatc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tacttattctcttttctaaggaatgccttctcaatactgcctcaatgtcaactggatatc 385

                                                                       
Query: 186 tatctgcttgggagttccaaaagacaacttacattaaaatcacagcagtattgaagccat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatctgcttgggagttccaaaagacaacttacattaaaatcacagcagtattgaagccat 445

                                                                       
Query: 246 tatttcccatatatggacatgggcagcttcattcccagtcctgactgtctctaatgcaga 305
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 446 tatgtcccatatatggacatgggcagcttcattcccagtcctgactgtctcaaatgcaga 505

                                                                       
Query: 306 accaggaggctatctagatgattttaactacagttactgactcggctcaatagcttgctt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 accaggaggctatctagatgattttaactacagttactgactcggctcaatagcttgctt 565

                                                                     
Query: 366 aaagcattaaaacattctgtatttttctcttttacttttaaatttataagattacatt 423
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaagcattaaaacattctgaatttttctcttttacttttaaatttataagattacatt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)