BAC Information

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BAC

Clone NameMSMg01-432G19
Chromosome11 (Build37)
Map Location 24,655,388 - 24,837,978
singlet/doubletdoublet
Overlap geneLOC100042282
Upstream geneRel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream gene5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432G19.T7 (MSMg01no432_g19.b1)MSMg01-432G19.TJ (MSMg01no432_g19.g1)
ACCAG524446AG524447
length768776
length of high quality
(start - end)		428 (49 - 476)430 (75 - 504)
definitionCHROMAT_FILE: MSMg01no432_g19.b1 PHD_FILE: MSMg01no432_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:08 2005CHROMAT_FILE: MSMg01no432_g19.g1 PHD_FILE: MSMg01no432_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,837,555 - 24,837,978)(24,655,388 - 24,655,817)
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAGCATATGCTAGAATTGGACTTCGGGACATGTCAAGTCAA
GATGGCACACTTATGAAGAAGTCTAGTGCTCTCATCAAAGTGATACTTGA
TTATAATGCCTTAATACAGAATTACACGATGTGTAGGATAACATCATTTG
CACAATAACATACACAAGTTGACCTTGTTCCAGAATTGTGTTTGTGTGTG
TATGTGTGTTTGTATGATTCATATGCACTATCAGTGTCAACATAGAAAAT
TCAAGTTTACCTTTAGCAAACAAGAGAATAATTAAGGGACTTCAAAGAAC
AGCTACATATGTGATTAGTGGATAAAAATTATGTTCTTTATTACATTCAG
AAATGATGAAGTACAAATTATAAATTATGTTCATATATACAAATAAACAC
ATATATTTATATATACATATATCTGTATATATAAATTATAAAGCAAACAG
AATATAAAATCAATTCAAAGTAACTATGACCTACCAGGGAGAAGATGAAA
TGTGATAAAGGAAGTTCTATAAAAATGGTTTTAAATGAATAAAACATGTT
TTAAGTCTCACCTTCTTTTTTCTTCCCCCCTTTTCCCTACATTAACCAAT
GGCTCTCTTTTCCCTGCATACCCTTTCTTATGAAATTTTTTTCTTAACTA
CAAAAATTATTCTTTCTCCCTCTACCCTTATTTTTTGTTAATTTCCCCTC
CTGTTTTTTTTCTTCCTA

GAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTATTCTGATAGAGCGTTTATGAAT
ATGGTGGTAGCTTTGACAGGAGCCATGCCTGTGGGTTGAGGCTGGGACTG
GCATGAGTAGGGATATGGTATCCCTTCATTTTGGTTCCCATGGCTGTGAA
GAGATGCCAAGACTAAGGCAACTCTTATAGGGGTCAGCATTTAGATGGGG
CTGGCTTGGAGTTTCAGAGGTTCAGTCCATTGTCATCAAGACAGGAAGCA
CAGCAGCATCCAGGAGAAGTTCAGGAGAAGGAACTAAGAATTCTGCCTCT
TGATCCAACTACATCCAGAAGAGACTGTCTCCTCAGCACTGGGTAGAGCT
TGAGCACTAGGAACCCTCAAAGCCCACCTTCACAGTGGCACACTCTCTCC
AACAAAACTGTACCTACTCCAACAAGGCACACCTTTTGATAGTGCCACTC
TCTGGCCATGCAGATTCAAACCACCACACATTGCTTTCCTCGCAAGACTC
TTCCCAAACACTGGGTACTGTTTTCTGTCTGAGACACAGTGGGCCCCTTA
TCAAATGCCCACCCAGTTATGGTGGTTAAATGGTTTCTAAACCCCCATAA
TCCCCCCCATTTTCCCCTTCTGCAGCCCTCCGTGTTAAGCCGGCTGGATT
ACCTGTATTGCTCCCTTTCCCTGGTCAATAAAAGTTTTTTTCCTAAAAAT
GGGACCCAATCTCCTTCCCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_g19.b1 MSMg01no432_g19.b1 CHROMAT_FILE:
MSMg01no432_g19.b1 PHD_FILE: MSMg01no432_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:08 2005
         (428 letters)



>mm_chr11_24837409_24838236
          Length = 828

 Score =  789 bits (408), Expect = 0.0
 Identities = 420/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagcatatgctagaattggacttcgggacatgtcaagtcaagatggcacactt 64
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattcaaagcaaatggtagaattggacttcgggacatgtcaagtcaagatggcacactt 511

                                                                       
Query: 65  atgaagaagtctagtgctctcatcaaagtgatacttgattataatgccttaatacagaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atgaagaagtctagtgctctcatcaaagtgatacttgattataatgccttaatacagaat 451

                                                                       
Query: 125 tacacgatgtgtaggataacatcatttgcacaataacatacacaagttgaccttgttcca 184
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 450 tacacgatgtgtaggataacatcatttgcacaataacatacacaacttgaccttattcca 391

                                                                       
Query: 185 gaattgtgtttgtgtgtgtatgtgtgtttgtatgattcatatgcactatcagtgtcaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattgtgtttgtgtgtgtatgtgtgtttgtatgattcatatgcactatcagtgtcaaca 331

                                                                       
Query: 245 tagaaaattcaagtttacctttagcaaacaagagaataattaagggacttcaaagaacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tagaaaattcaagtttacctttagcaaacaagagaataattaagggacttcaaagaacag 271

                                                                       
Query: 305 ctacatatgtgattagtggataaaaattatgttctttattacattcagaaatgatgaagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctacatatgtgattagtggataaaaattatgttctttattacattcagaaatgatgaagt 211

                                                                       
Query: 365 acaaattataaattatgttcatatatacaaataaacacatatatttatatatacatatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 acaaattataaattatgttcatatatacaaataaacacatatatttatatatacatatat 151

               
Query: 425 ctgt 428
           ||||
Sbjct: 150 ctgt 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no432_g19.g1 MSMg01no432_g19.g1 CHROMAT_FILE:
MSMg01no432_g19.g1 PHD_FILE: MSMg01no432_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:08 2005
         (430 letters)



>mm_chr11_24655188_24656017
          Length = 830

 Score =  824 bits (426), Expect = 0.0
 Identities = 429/430 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtattctgatagagcgtttatgaatatggtggtagctttgacaggagccatgcctgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattctgatagagcgtttatgaatatggtggtagctttgacaggagccatgcctgtgg 260

                                                                       
Query: 61  gttgaggctgggactggcatgagtagggatatggtatcccttcattttggttcccatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgaggctgggactggcatgagtagggatatggtatcccttcattttggttcccatggc 320

                                                                       
Query: 121 tgtgaagagatgccaagactaaggcaactcttataggggtcagcatttagatggggctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgaagagatgccaagactaaggcaactcttataggggtcagcatttagatggggctgg 380

                                                                       
Query: 181 cttggagtttcagaggttcagtccattgtcatcaagacaggaagcacagcagcatccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggagtttcagaggttcagtccattgtcatcaagacaggaagcacagcagcatccagg 440

                                                                       
Query: 241 agaagttcaggagaaggaactaagaattctgcctcttgatccaactacatccagaagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagttcaggagaaggaactaagaattctgcctcttgatccaactacatccagaagaga 500

                                                                       
Query: 301 ctgtctcctcagcactgggtagagcttgagcactaggaaccctcaaagcccaccttcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtctcctcagcactgggtagagcttgagcactaggaaccctcaaagcccaccttcaca 560

                                                                       
Query: 361 gtggcacactctctccaacaaaactgtacctactccaacaaggcacaccttttgatagtg 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggcacactctctccaataaaactgtacctactccaacaaggcacaccttttgatagtg 620

                     
Query: 421 ccactctctg 430
           ||||||||||
Sbjct: 621 ccactctctg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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