BAC Information

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BAC

Clone NameMSMg01-432I14
Chromosome11 (Build37)
Map Location 26,927,045 - 26,927,443
singlet/doubletsinglet
Overlap geneLOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432I14.T7 (MSMg01no432_i14.b1)MSMg01-432I14.TJ (MSMg01no432_i14.g1)
ACCAG524532AG524533
length959794
length of high quality
(start - end)
39 (67 - 105)397 (70 - 466)
definitionCHROMAT_FILE: MSMg01no432_i14.b1 PHD_FILE: MSMg01no432_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:17 2005CHROMAT_FILE: MSMg01no432_i14.g1 PHD_FILE: MSMg01no432_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCTCCGCNGGATTCTGC
ACTAATTTCAGCTGACCCTGAGCTGTGTTGTTGTTGTTGTTGTTGTTGTT
GTTTTTGAAATTATTCCCCTCTCCGTAATAAAAACCCACCTACCCGTCTG
CCCATATTATTAAGTGGAGGAGTATTATTTGTGTAGATCGCGACCTAAAT
ATTTCTTGCTCATGTACATCAACTACTCACTCATTCCCCCATCAAACTTT
CCCTCCCATTTTCTCCCCTACCAATACAAACTTTCCTAAACCTCACACCT
ACTTCCACCTACATCTCCTACCTAACACACTATTTTTTTTTTTTTACCCC
CAACACACAAATCACCACAGCAATTCTATCTCCTTACATACCAACTCAAA
CGTGCGATCAGCCGTCCTATACCAATACTACCCCCACTTCATTTCCCCCC
CCCACCCCCACTTTAACCCCACTCTCCCCAATAATTTCCTCTCCTTATAT
CTTATCTCCTCATTCATCATTCTTCACCAACTCCCCCCATATCTCCTCAT
ATATCCCTTCCCTCCCTAATATTTAATACCACACTATCTTACTTCCAAAT
CACAAATCCCTCAATCATCTTACCCCCCACATACATATCTCTATTATCCA
CATCTCTCCCCATCTTATCCACTCTTCCTTTTTACCCCTCATTACACCCC
CCTAAACTCACTCACAATACCTTCTCCTTTCTTTCTCATTATACTTTCAC
CCCTTTATTTCTCCATCACCCCCCATACTCACCCCACCAGCCTCCTTCTC
ATCCCCCTTCTATCCCCTTATCCTTCCTATCTCCATAATTTACATCTAAT
ATCCCATTCCTATATTCCATATATCTCCCATACCGATCTCCCAAGCGCTA
TTACCACTATCCACCTCCCTATATCATCTCCATATCCCCTCTATTTTCTC
TCTTACTTA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTATTCATTTGAGTGCACATTGAAAGCACTA
CTACACAGTATTAAGATTTTTCTCTCACTAGCCATAAAAATCTGTAAAAT
CTGTCTGAAGAAAATGAAAAACCTTTTTTTGTGTCCATTTTACATTTGTA
TGCTTTTTTAGCTCCATGAATCTTCTTGGTTCTGGAAGAAAGGTGGAAGA
TTTAGCTTTTCATTTGTAAGAGGAAACTCTCACAGGCTGACAGCTTCACT
CAATACCTAAATTGATATCCTCATCTCAATTATATTAAGCTATGCAAACC
TTTTCACAATTCCACATGAAAATGTATGTGAAAAGTATATGCCAATATAT
GTAGAGCGGTGGGTTTTACTCACCTTAAGCAGAATATAATGGTCCTAACA
GCTGGTCACATTTAGTTGGAATTTGAACATTCCACTGGCTTGTGCTTAAA
ATTTTGATAATGGGTCCCGGTTATTTATCCCCTTCCCTTCCTCTAATTTT
CTTTCTCCGTTTCAATCTTTATTCATCTTTTTTTTACTCTCTCTCATTCT
TACCTATGTCCCCTTTTTTTCTCTCCACCTTTCTCATCAAAACATTTTTT
TTTCATTACTCGATTATATTCCTTCTATATATCTTTCTACCGTGTTTATT
CTGTTTGACAACCATTCTCCTTTCCTACCCCTTTTTACAGTTTCTTCGTT
TCCCTCGCGTACCCTCTTGATTTATCCTTTACGTTCTTTGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_i14.g1 MSMg01no432_i14.g1 CHROMAT_FILE:
MSMg01no432_i14.g1 PHD_FILE: MSMg01no432_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:17 2005
         (397 letters)



>mm_chr11_26926845_26927643
          Length = 799

 Score =  745 bits (385), Expect = 0.0
 Identities = 395/399 (98%), Gaps = 2/399 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattcatttgagtgcacattgaaagcactactacacagtattaagatttttctctcact 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctattcatttgagtgcacatggaaagcactactacacagtattaagatttttctctcact 540

                                                                       
Query: 61  agccataaaaatctgtaaaatctgtctgaagaaaatgaaaaacc--tttttttgtgtcca 118
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 539 agccataaaaatctgtaaaatctgtctgaagaaaatgaaaaacctttttttttgtgtcca 480

                                                                       
Query: 119 ttttacatttgtatgcttttttagctccatgaatcttcttggttctggaagaaaggtgga 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttttacatttgtatgcttttttagctccatgaatcttcttggttctggaagaaaggtgga 420

                                                                       
Query: 179 agatttagcttttcatttgtaagaggaaactctcacaggctgacagcttcactcaatacc 238
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agttttagcttttcatttgtaagaggaaactctcacaggctgacagcttcactcaatacc 360

                                                                       
Query: 239 taaattgatatcctcatctcaattatattaagctatgcaaaccttttcacaattccacat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 taaattgatatcctcatctcaattatattaagctatgcaaaccttttcacaattccacat 300

                                                                       
Query: 299 gaaaatgtatgtgaaaagtatatgccaatatatgtagagcggtgggttttactcacctta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gaaaatgtatgtgaaaagtatatgccaatatatgtagagcggtgggttttactcacctta 240

                                                  
Query: 359 agcagaatataatggtcctaacagctggtcacatttagt 397
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agcagaatataatggtcctaacagctggtcacatttagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 799
Length adjustment: 9
Effective length of query: 388
Effective length of database: 790
Effective search space:   306520
Effective search space used:   306520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)