BAC Information

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BAC

Clone NameMSMg01-432K02
Chromosome11 (Build37)
Map Location 63,410,924 - 63,411,286
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
Downstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432K02.T7 (MSMg01no432_k02.b1)MSMg01-432K02.TJ (MSMg01no432_k02.g1)
ACCAG524603AG524604
length808787
length of high quality
(start - end)
368 (38 - 405)362 (70 - 431)
definitionCHROMAT_FILE: MSMg01no432_k02.b1 PHD_FILE: MSMg01no432_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:25 2005CHROMAT_FILE: MSMg01no432_k02.g1 PHD_FILE: MSMg01no432_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
TATACCATTACCTTGAAAATTGGTGGATCACAAAGATACTAAAATGTCAT
ATGGAAAATTTAAGAGTACAAATTTAAGATAATGTATCACCCAGCTCTTG
CTTTGATAATGACTAGTTAATGGGAAGGGGAAAAAATGAAATATGTCGGA
AGATAAATAATGGTAGCTAGCAAGTGAAAATTCTGTAGAGAAAAGTGTTT
GCTAATAAGTGCAAGAGCATTTAAAGCAGAAAAGCACAGAGCCTGAAGAC
ATTGGAGGTTCATGAAGGAGTGTCGGTATTCAGACAATCCCAGACTGAGG
TTTTGAGTAATGTACCACACAGCACATTCACAAGGAGGATTTTTGTTTGT
GTACAATTAATGGATCAAACTCATGTTTACACATATCCTTAGCCTATTGT
TCCATCCAATCATCATAGATGGTGATGCTATACCATGAATTATTCGAATT
TTTTTGTGAATTATCCGATTGTGTGTCCAATATATATGTCCCTATTACTT
TTTATTTTTTGCACCGACTTTCGCTTGTTTTTTCCTATTTCAGTCTCTTT
TCTCCTTATCTTTCTACCTTCCTTTTTTTTCCCCTTTTTCCTTTTTTCTC
TCTTCTCGTTCCCTTTTTCCTCCCCTTTTTCCTTTACCTTCTTCCTCTTT
TCTCCTTTTGTCCTTTTCTTTCTTCTTTTTTCCCGTTTCTTCCCCATCTC
CCTCTCTCCTTCCCCCTCTCTCTTATTCTTTTATTCCCCTTTTTTTCCTC
CTTTTTAG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGTAGAGATGGAGGCTTGGAGCAGTCTAC
TCACAAACCTTTGGAAAGGCGGGGCAGAGGCCTGGGATTGAGTCTCACTT
GAAGCCACCAGAAGGAACCCGTGTTACTGATGCCTTTGACCTCAGAATCT
ATATGACTCTCAGAACCACAAGACAGCAACATCCTGTCTTAATTCCTTGG
GCTTTCAGTAATGCAACCTTAGTAAACATGGAGGGGTGGGCAGAAAAGTG
TGATGGCTTGCATAGGAAATGCCCCATAGGTTTGTGTATTTCAATACTTG
GTCCCTGGATGCTAACACTATTGGGGGAATTTATGGATCCTTTGGACCTT
GGGTTTGTCTGGCACTTGTAGACAGAGGATTGCAGGAATGGGACCGGAGA
GTTATAGCTTAGTCTTTCTTGAACCAAGCTCTATGCTTTCTAATCCTGTA
TGGTGTAATCTAGCATTGTCTTTTCCTGTGCTCGCTGCTTCTTTTCCTTT
TCTTGTTTACTTCTGTCGTGTTTTGTTTGGTTCATTCTGAAGCTTAGTAA
TCCTCCTCTGTTCTTCTTCTTCCCCCTTCGGTTGTTTTTTTTCTTCGTTT
TTTTTTTCATTCGTCGGATCGCCGTCTCTTCTCCCCTCTTTTTGTTTCTC
CCGGTTATTTTTTGCTTCCCTCTCTTTCCCTTACTTCCTTTCCCCTCGCC
TTCCCCGTTACTTTATTCACTTCTTCCTCTTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_k02.b1 MSMg01no432_k02.b1 CHROMAT_FILE:
MSMg01no432_k02.b1 PHD_FILE: MSMg01no432_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:25 2005
         (368 letters)



>mm_chr11_63410720_63411486
          Length = 767

 Score =  658 bits (340), Expect = 0.0
 Identities = 358/364 (98%), Gaps = 1/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatataccattaccttgaaaattggtggatcacaaagatactaaaatgtcata 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatataccaaaaccttgaaaattggtggatcacaaagatactaaaatgtcata 264

                                                                       
Query: 65  tggaaaatttaagagtacaaatttaagataatgtatcacccagctcttgctttgataatg 124
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 tggaaaatataagagtacaaatttaagataatgtatcacccagatcttgctttgataatg 324

                                                                       
Query: 125 actagttaatgggaaggggaaaaaatgaaatatgtcggaagataaataatggtagctagc 184
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actagttaatggaaagggg-aaaaatgaaatatgtcggaagataaataatggtagctagc 383

                                                                       
Query: 185 aagtgaaaattctgtagagaaaagtgtttgctaataagtgcaagagcatttaaagcagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagtgaaaattctgtagagaaaagtgtttgctaataagtgcaagagcatttaaagcagaa 443

                                                                       
Query: 245 aagcacagagcctgaagacattggaggttcatgaaggagtgtcggtattcagacaatccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagcacagagcctgaagacattggaggttcatgaaggagtgtcggtattcagacaatccc 503

                                                                       
Query: 305 agactgaggttttgagtaatgtaccacacagcacattcacaaggaggatttttgtttgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agactgaggttttgagtaatgtaccacacagcacattcacaaggaggatttttgtttgtg 563

               
Query: 365 taca 368
           ||||
Sbjct: 564 taca 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)