BAC Information

Click to search

BAC

Clone NameMSMg01-433B03
Chromosome11 (Build37)
Map Location 39,109,276 - 39,109,684
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433B03.T7 (MSMg01no433_b03.b1)MSMg01-433B03.TJ (MSMg01no433_b03.g1)
ACCAG524938AG524939
length727717
length of high quality
(start - end)
491 (40 - 530)450 (71 - 520)
definitionCHROMAT_FILE: MSMg01no433_b03.b1 PHD_FILE: MSMg01no433_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:03 2005CHROMAT_FILE: MSMg01no433_b03.g1 PHD_FILE: MSMg01no433_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CCTAATGTTTTTTTTGCGTATCTATGATATACATTTTCATCAAAGAGCAG
AAAAATAATAATTTATTAAATAAACAGAATCATTTACATTTATGGAAAGT
ATTTTATATATAAAGAAAGTATTGCCGGGCATGGTGGCGCATGCCTTTGA
TCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAT
CCTGATCTACAAAGTGAGTTCCAGGACAGCCAAGACTTCACAGAGAAACC
CTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAGTATTATGATTTTGGAA
GATTGTGACAGGTATTGTTCTTTAAATTCAATGGTTTAAGAACATTTTAT
AGGTTATAAAATACAGATAGATTAAATGATGTATTCCCTGGACATAACCT
TGCTTGCAAGAATAGATTATTAACTTGAGATATTTAAAATATAACTTGAT
CCCAGTACCATGCTTCTTGGCTAACCAGTCTCTAAGCTCTGACATTGTGG
TTGGAGGAGAGAAAGAGACTTATTGTCCACTGCTTGCTGTCCTGGAATAT
ACTATACACAGTTAGTCGGTCCCTGACCTCATCCACAATTTAATGGTCCT
TTTTCTCCCACGCTGGAACATAAAGGTAACATCTTTCTTTCCCCCCCACC
CCTTTTCTCACATAGGGGCTTTTTTGC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTGCAAAACTGCTTTAGAGAATAAATCC
CAGTAGAATGATACATATGTTGCCTGCAGAGGAAGCCATGAGGACCAAGC
CAGTAAATAGCACTCCTCCAGGTCCTCTGCATCATCTCCTTGCTCCAGGT
CCCTGGAGCACTTGAATTCCTGTCCTGACTTCCATTGCTGACGAACTAGC
ATGTAGAAGCTTAAGCTGAACAAACCCTTTCCTTCCAAAGTTACTTTGGA
GATGGTGTTTTGCTGCAGCAATAGAAACCCAAATTAACAGTCAGAATGGC
TAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GTGGAACACTCCTCTATTGCTAGTGGAATTGCAAGCTTGTACAACCACTC
TGGAGATCAGTCTGGCAGTTCCTCAGAAAATTGGACACAGTGCTACCTGA
AGATCCAGAAATACCTCTCCTGCGCCTAGACCCAGAAGATGTTCCAACTG
GTAATAAGGATACCTGCTCCACTATGTCCATAGCAGCCCTATTTATCTTA
TCCTGAAGGTGCAAATGAACTTACGGCCTTTATCCTTACCTGGTTTCCTT
CCTTGCGCTGGGCCTCCCCACTCCTGGTCCTCTACTTTCTTCCACCTCAC
CTGTTCTTTTCCAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_b03.b1 MSMg01no433_b03.b1 CHROMAT_FILE:
MSMg01no433_b03.b1 PHD_FILE: MSMg01no433_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:03 2005
         (491 letters)



>mm_chr11_39108794_39109684
          Length = 891

 Score =  737 bits (381), Expect = 0.0
 Identities = 404/415 (97%), Gaps = 6/415 (1%)
 Strand = Plus / Minus

                                                                       
Query: 77  ttaaataaacagaatcatttacatttatggaaagtattttatatataaagaaagtattgc 136
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 891 ttaaataaacagaataatttacatttatggaaagtattttatatataaagaaactattgc 832

                                                                       
Query: 137 cgggcatggtggcgcatgcctttgatcccagcactcgggaggcagaggcaggaggatttc 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 cgggcatggtggcgcatgcctttgatcccagcactcgggaggcagaggcaggaggatttc 772

                                                                       
Query: 197 tgagttcgaggccatcctgatctacaaagtgagttccaggacagccaagacttcacagag 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgagttcgaggccatcctgatctacaaagtgagttccaggacagccaagacttcacagag 712

                                                                       
Query: 257 aaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaagtattatgattttggaagattg 316
           |||||||||||| |||||||      ||||||||||||||||||||||||||||||||||
Sbjct: 711 aaaccctgtctcaaaaaacc------aaaaaaaaaaaagtattatgattttggaagattg 658

                                                                       
Query: 317 tgacaggtattgttctttaaattcaatggtttaagaacattttataggttataaaataca 376
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 657 tgacaggtattgttctttaaattcaatggtttaagaacattttataggttataaaataga 598

                                                                       
Query: 377 gatagattaaatgatgtattccctggacataaccttgcttgcaagaatagattattaact 436
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gatagagtaaatgatgtattccctggacataaccttgcttgcaagaatagattattaact 538

                                                                  
Query: 437 tgagatatttaaaatataacttgatcccagtaccatgcttcttggctaaccagtc 491
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgagatatttaaaatataacttgatcccagtaccatgcttcttggctaaccagtc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)