BAC Information

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BAC

Clone NameMSMg01-433F24
Chromosome11 (Build37)
Map Location 39,332,186 - 39,332,430
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433F24.T7 (MSMg01no433_f24.b1)MSMg01-433F24.TJ (MSMg01no433_f24.g1)
ACCAG525172AG525173
length552774
length of high quality
(start - end)
96 (110 - 205)245 (68 - 312)
definitionCHROMAT_FILE: MSMg01no433_f24.b1 PHD_FILE: MSMg01no433_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:27 2005CHROMAT_FILE: MSMg01no433_f24.g1 PHD_FILE: MSMg01no433_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTCTCTCTCCCCTCCTACTCCCTTCCTACTTCTCCCGCGNNNNGGNC
NNNNNTCCCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
CCANAGGATCCGCGGAAATCCACATCATGCCCTCTAATTCCAATCCCTTC
CTAATCCTTCCATGTCCAGCCACATCATTGTTACCCCACCACCACCAAAT
AAAGCANAACAATCCAAAAACAAAACAAAACAAAACAAACACAANNCACA
ACAAAAAAGCCATCACTGGNTNAAGAACTACAAATCCTCCTATTAACATT
TCCTAAAAAAGTTCCAAGCCCCCCCCCTAANAAAAGGGATTCCAAGGGTA
TCTCTACCCCCCCTTTGGGGTTTTTTCCCCCTTGGAAAATTTTCCACAGG
GGGGGTTTTTTCGGCAAAAATTTTGGANAACCTCTGGGGTAATATTTTTT
CTAGAGAAAATTTCTTTTTGGGGTGGGGCAAAAAAAAAATAAACCCCCCC
CTCTTTTATTTATATTAAAGGGGGGGGGGGAGAACCTGATTTTTATTTTT
TT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGCCTGAATGCTTACTTTGAGGACACAGTGAA
GTTCTTTGGAAAACTAGGAAAGCTTTCTGTAGATGCAGGTTGATGCATTT
CCTGCACTCAGTAAGGTAACTGGATAAAGCAGGCATATCCCGGGTGGAGG
AGTTTGATTCATGAAGATTCTTTTAGGGACACTGAAGGACTCAAAGGTAG
AAAGAAGAATAAACCCAGTAGCAGGGGAATGCCAGGGCCAGGAAGTGGGA
GTGGGTGGGTTGTTTTNNNNNTTTTTTNTTTTTTTTTTTNTNTTTTTTTC
TCTTCNCTTCTTTTCCTTTTTCTCCTTTCCTTTTTTCCTTCCCTCCCCTT
TTCTCCCCCCTCCCCTCCTTCCTTTTCTTCTTTCCCCTTTCCCCTTCNTC
GCCTTCCCTCTCTCCCTTCTTCCCTTTTTCCCTTTTTCCCCCCTTTCCTT
CCTCCCTCTTTCGCCCTTTTCTTCCTTTCCCTTTCCCTCTTTCCCCTTTT
TCCCCTTCCCTCTCCCTTCTCGCCTTTCCTTTCCCTTTCCCCCTTTCCGC
TTCCTCTTTTCCTCCNTTCTTCCCCCTTCTCTCTTCTCCTTCTTTCCTTC
TCCTCTCTCTTTTTCCTCTCCCTTCCCTTCTCCTTCTCTCTTTCCTTCTT
CTCCCCTTCCTTTCCCGTCTTCCTTTTCCTCCCTTTTCTTCTTCCCTTTC
TCTTCCCCTTTGCTTATCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_f24.g1 MSMg01no433_f24.g1 CHROMAT_FILE:
MSMg01no433_f24.g1 PHD_FILE: MSMg01no433_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:27 2005
         (245 letters)



>mm_chr11_39332035_39332679
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcctgaatgcttactttgaggacacagtgaagttctttggaaaactaggaaagctttc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgcctgaacgcttactttgaggacacagtgaagttctttggaaaactaggaaagctttc 337

                                                                       
Query: 61  tgtagatgcaggttgatgcatttcctgcactcagtaaggtaactggataaagcaggcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtagatgcaggttgatgcatttcctgcactcagtaaggtaactggataaagcaggcata 277

                                                                       
Query: 121 tcccgggtggaggagtttgattcatgaagattcttttagggacactgaaggactcaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcccgggtggaggagtttgattcatgaagattcttttagggacactgaaggactcaaagg 217

                                                                       
Query: 181 tagaaagaagaataaacccagtagcaggggaatgccagggccaggaagtgggagtgggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tagaaagaagaataaacccagtagcaggggaatgccagggccaggaagtgggagtgggtg 157

                
Query: 241 ggttg 245
           |||||
Sbjct: 156 ggttg 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)