BAC Information

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BAC

Clone NameMSMg01-433I11
Chromosome11 (Build37)
Map Location 11,402,057 - 11,402,420
singlet/doubletsinglet
Overlap gene4930415F15Rik
Upstream geneVwc2, Zpbp, LOC625132, EG432534
Downstream geneIkzf1, Fignl1, Ddc, Grb10, Cobl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433I11.T7 (MSMg01no433_i11.b1)MSMg01-433I11.TJ (MSMg01no433_i11.g1)
ACCAG525290AG525291
length725754
length of high quality
(start - end)
550 (61 - 610)364 (67 - 430)
definitionCHROMAT_FILE: MSMg01no433_i11.b1 PHD_FILE: MSMg01no433_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:38 2005CHROMAT_FILE: MSMg01no433_i11.g1 PHD_FILE: MSMg01no433_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TGCCGGCGCTATACGACTCACTATTCCGAGAGGATCCGCGGAATTCAAAA
TTCACCAAAAACATCATCCACTGTAATCCATTAGGCTTCATCCCAGGCAT
GCAAGGGTGGTTCCATATATGGAAAATCCATCAGTGTAATTCATATAAAT
AAACTGAAAGAAAAAACCCACATAATCATTTCATTAGGTGATGGAAAAGC
ATTTAATGAAATTTAGGAGCCCTTCATGTTAAAAGAGAGAGAGATCAGGT
ACAAAGCAAATTCCTAAATACAATAATGGTGATGTACAGCAAGAAAATAG
ACAACACTATTAAACTGGGAGAGATGTAAAGTAATTCCACTAAAATCAGG
GACAAGGTAAGGCTGTCCACTCTTTCCATATCTCTTGAATATAGTACTTT
AACTTCTATCTAGAGCAATAAGATGACTAAAGGAGATCAAGAGAATACAA
ATTCAAAAGGAAGAAATCAAACTATCACTATTCACAGATGATATGATTGT
ATACATAAGTGACCCCCAAAATTCTACCAGACAACACCTAGTTGGTAAAC
TTCTTCAGTAATGTGACTAAATATGAAATTAATTTAAAAAGGCAGTAGCC
CTCCTCTATACAAACAATAAGTGAGCTTAAAAAATTTTTAATAACACCAT
TTATAACCAAGAGCATTCTACTGATTCCTTGCAATTATCATTCAAATTCC
CCACATTTTTTGCAAAACTTCAAGG
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGTTCTACCTTATGAATAGGTTGGATTCTCTTG
GTCCCCAACCTACTCTCAAGCTATAAGTTCCCTAACTTTGAATGCCTCCT
TTATTTTTCAAAATAGTGTGAGCAAGCCAGAAGTGCAGAAACCAGTTCTG
TTCCCGTTCTGCAGACATGGAGGCTGAGGTCAGAGAAAATGACATGAGGA
GCCCCAAATGGCTTGTTTCAGGTTACATCTAGATAATGAATCTTCCACAA
GTGCCAAAATTAAGAAACTGTCATTTATAATGAGAAAACATGTCATGATT
CTGTTTGTATGGATGTGTTATATATGTATGTAGGCATAATTGTAAAGAAA
ATATATAATGCAGAAGTTATTTTTCCTTCATTGCGCATAACAGGAAAATG
CTTCAGTGAGAAGTTACTTATATAAACTTGGTGCAGTGTCTCATAGCAAT
ATTATGTACCCATTTCTTGACTTGTGGAGACTTACATTAGCGTTTTACCT
TTTTTCTTTCCTCTTCGTTCCCTTCGCTCGTGCCCATATAATTTCTCTGT
CCTTCTACCCCATGTTCTCTTCTCTTCTCTTCCCCTTCTTCTTTTTCCTC
TTCTTCTTCTATCTGTGTTCTTTATTTCCCTTTTTTTATATTATTCCTTT
TTTTTTTCCTTCTCTTTCCTCTTTTTCGCATTCTTTATTCTCCTTCTCAT
TTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_i11.g1 MSMg01no433_i11.g1 CHROMAT_FILE:
MSMg01no433_i11.g1 PHD_FILE: MSMg01no433_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:38 2005
         (364 letters)



>mm_chr11_11401857_11402620
          Length = 764

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttctaccttatgaataggttggattctcttggtccccaacctactctcaagctataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgttctaccttatgaataggttggattctcttggtccccaacctactctcaagctataa 505

                                                                       
Query: 61  gttccctaactttgaatgcctcctttatttttcaaaatagtgtgagcaagccagaagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttccctaactttgaatgcctcctttatttttcaaaatagtgtgagcaagccagaagtgc 445

                                                                       
Query: 121 agaaaccagttctgttcccgttctgcagacatggaggctgaggtcagagaaaatgacatg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 agaaaccagttctgttcccgttctgcagacaaggaggctgaggtcagagaaaatgacatg 385

                                                                       
Query: 181 aggagccccaaatggcttgtttcaggttacatctagataatgaatcttccacaagtgcca 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 aggagccccaaatggcttgtttcaggttacatctagataatggatcttccacaagtgcca 325

                                                                       
Query: 241 aaattaagaaactgtcatttataatgagaaaacatgtcatgattctgtttgtatggatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaattaagaaactgtcatttataatgagaaaacatgtcatgattctgtttgtatggatgt 265

                                                                       
Query: 301 gttatatatgtatgtaggcataattgtaaagaaaatatataatgcagaagttatttttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttatatatgtatgtaggcataattgtaaagaaaatatataatgcagaagttatttttcc 205

               
Query: 361 ttca 364
           ||||
Sbjct: 204 ttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)