BAC Information

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BAC

Clone NameMSMg01-435E06
Chromosome11 (Build37)
Map Location 106,629,135 - 106,629,607
singlet/doubletsinglet
Overlap genenone
Upstream geneTanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885
Downstream genePolg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435E06.T7 (MSMg01no435_e06.b1)MSMg01-435E06.TJ (MSMg01no435_e06.g1)
ACCAG526610AG526611
length764831
length of high quality
(start - end)
476 (46 - 521)100 (76 - 175)
definitionCHROMAT_FILE: MSMg01no435_e06.b1 PHD_FILE: MSMg01no435_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:56 2005CHROMAT_FILE: MSMg01no435_e06.g1 PHD_FILE: MSMg01no435_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTAAACCAGACTGGCCTCAAACTCAGAGATCTGCCTGCCG
CTGTCACCCGAGTGCTGGGAAGAAAGGTGCATACCACTATGCCTGGCTAG
TTTTGTGTTCTTAATAAACCATGTCTTTAGTTAGGGTTTTACTGCTGTGA
ACAGACACCACGACCAAGGCAACTCTCATAAAGGGCAACATTTAACTGGG
TCTGGCTTTCAGGTTCAGAGGTTCAGTCCAGTATCATCAAGGCAAGAGCA
TGGCAGTGTCCAGGCAGGTATCTTAAAGCCCACACCCACAGTGACACACG
TACTCCAAGGCCACACCTCCAAATAGTGAAACTCCGTGGGGCCATATTCA
AACCACTACAGACCATATCAAAAGGACAATAAAAAATGAATCAAATATCT
ACTTTATAAATACAAAAGTCCAAAACTGTATTAATGTAAGCGAATGAACT
CAACAGAGAATATTTATTAGAGAATATGAAGACCTACCCATTGCTAGCTG
ACGCTAGGTACTTGACCAGGAAGTCTCTCACCTTGGATAATGGGATCATT
TTCCTTCACCGGGGGTCCCTGCTCCTCACTTGGATAAACCCGTTTTCCCC
CCAACCCCCCTGTTTCAACGTAAAAAAATACTTCATTCCTCTCACTCGTA
AAAACGCTTTCCTACCTTTTGCCGCCCGCGTTAAATTACTTCTCCTTCTT
TGATCTTCGGCATC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGTGAACACTAAGCAATACAGTT
GATAGTTCCTCATTTTATGTTGTATATTTCATACATATGTATATGTATAT
GTATATGTATAGGTATATGTATAGGNATNNGNNNNNNNNNNNNGNNGNNG
NNNNNNNNNNGNNGNNNGNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGG
TTTGGGGGGGGGGGGGGGGGGGGGNGGGGGGGTGGGGGGTGTGGGGGGGG
GGCGGGGGGGCGGGGTTTTTTGTTGGGGGTGGGCGCGGCGGCGCGCGGGG
GGTGGGGGTTGGGCCGGGGCCGGGCGGCGGGGTGGGCGCGGGCGGGTGGG
GGTGCTGGCGGGCCGCCCCCGCCGCGGCCCCGGGTCGTCTGGCGTCGGCG
GGTGGTGCGCTCCCGGCCCGCTGGCCGGGTGGGGTGGTGCGTCGCCCGTG
CCGTGTGGCGCTTTCTGGCCCGCCGCGCCCTTTTTTTGCTTCGCCCCCTC
GTTCCGGCCCTGCGTTGTCGCCGCGCGGCGCGGCCCGCTGTCGCTTGGGC
GGGCCGCGCGCTTGTCCCGCCCCGTGTTCGCGCGCCCCCCCCTTGTTTGT
GCCGCCTTTCGTCTGCTCCGCCGCGCCCCCTCCGTCTTTGCGCCCCCGCT
TCCGGTTTCCGGCCTCGCTCTCCTTCCGGCGCGCTCTCCCCTCCGCCTGC
CGCGGTTGTCTGTGCGCGTGCTCTCCCGCCGGCCCGGCGGTCGGCGCGCG
CCGCGTCTTCCCTCCTGCTCGCCCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_e06.b1 MSMg01no435_e06.b1 CHROMAT_FILE:
MSMg01no435_e06.b1 PHD_FILE: MSMg01no435_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:56 2005
         (476 letters)



>mm_chr11_106628932_106629807
          Length = 876

 Score =  899 bits (465), Expect = 0.0
 Identities = 471/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtaaaccagactggcctcaaactcagagatctgcctgccgctgtcacc 63
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaactcactctgtaaaccagactggcctcaaactcagagatctgcctgccgctgtcacc 263

                                                                       
Query: 64  cgagtgctgggaagaaaggtgcataccactatgcctggctagttttgtgttcttaataaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgagtgctgggaagaaaggtgcataccactatgcctggctagttttgtgttcttaataaa 323

                                                                       
Query: 124 ccatgtctttagttagggttttactgctgtgaacagacaccacgaccaaggcaactctca 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 ccatgtctttagttagggttttactgctgtgaacagacaccatgaccaaggcaactctca 383

                                                                       
Query: 184 taaagggcaacatttaactgggtctggctttcaggttcagaggttcagtccagtatcatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaagggcaacatttaactgggtctggctttcaggttcagaggttcagtccagtatcatc 443

                                                                       
Query: 244 aaggcaagagcatggcagtgtccaggcaggtatcttaaagcccacacccacagtgacaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaggcaagagcatggcagtgtccaggcaggtatcttaaagcccacacccacagtgacaca 503

                                                                       
Query: 304 cgtactccaaggccacacctccaaatagtgaaactccgtggggccatattcaaaccacta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgtactccaaggccacacctccaaatagtgaaactccgtggggccatattcaaaccacta 563

                                                                       
Query: 364 cagaccatatcaaaaggacaataaaaaatgaatcaaatatctactttataaatacaaaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagaccatatcaaaaggacaataaaaaatgaatcaaatatctactttataaatacaaaag 623

                                                                
Query: 424 tccaaaactgtattaatgtaagcgaatgaactcaacagagaatatttattaga 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccaaaactgtattaatgtaagcgaatgaactcaacagagaatatttattaga 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)