BAC Information

Click to search

BAC

Clone NameMSMg01-435H17
Chromosome11 (Build37)
Map Location 93,044,661 - 93,045,008
singlet/doubletsinglet
Overlap geneCar10
Upstream geneLOC382545, LOC100039286
Downstream geneLOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435H17.T7 (MSMg01no435_h17.b1)MSMg01-435H17.TJ (MSMg01no435_h17.g1)
ACCAG526776AG526777
length815787
length of high quality
(start - end)
352 (39 - 390)427 (73 - 499)
definitionCHROMAT_FILE: MSMg01no435_h17.b1 PHD_FILE: MSMg01no435_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:14 2005CHROMAT_FILE: MSMg01no435_h17.g1 PHD_FILE: MSMg01no435_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAATTC
CAATCTGTCACCACAGTGGGGTTGGGGACTTTAGAAACACACAGAAGAGT
GACAAAGGACCCATTTGTAGATCTGGAATGTCACCAGCTCCAAGTTGTTC
AGTGTGAATCTAGGGAGTGGAGGTAGCAACATGTACCAGATTCCCTGGCA
TCTGAATTCCTGTGTGGTACAGCGTCTAGATGTTTCTATTGTACTTGATG
TTCCTGAAAGCATGACCAGCTCTAGAAAACAGATCCAGAAACCATTAAGT
GGATTGACAAAGAATATACTTCTGTGCTAGAGAAAAATGGGTTAAAAATC
CAGGAAGCCCTTTGATGTCTTCACAGTCCCCTGCTCTGAGCCCTACATGA
TAGACAGCGCATCCTTCTCTTCCTCAATATGTAGAAGGGCATGACTGACT
ACAGGCATAAAAGGAGATTCCAAAGGCTTATTAACTCAGGACCCCCATAT
CGAATATAGTTGACGCTTGATACACTTTACTCCCGATGGCTTTTTTTGGC
GGACCCCTTTGTTAACCTCCATTCCTCTTTGCTTTCTATTCAACTTTCCT
TCCTATTTCTTTCCCTTTCCTTTTCTTTTCTCTTTCTTTTCTTCCTCTTT
TTTTTTTATACCTCATTTTTTTCTTTCCTTCTCCTCTCATTTTTCCTACC
CTCTTTGTACGTTTATCCTTCTTCTTTTCTTTCCCTTCTTTCCTTTATCT
ACCTCTTTTTTTTATCTTTCCCATTTTTTTTCTCTCCTTTTTTTATTTCC
TCTTTTTTCTTTTTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGAAGTTAGACTCCAGAGAATCAAATA
ACCCTATTAAAAGTGAGGTACAGAGCTAAACAAAGAATTCTTAACTGAGG
AATATCGAATGGCCAAGAAGCACCTAAGGAAATATTCAACATCCTTAGTC
ATCAGGGAAATTCAAATCAAAATAACCCTGAGATTCCACCTCACACAAGT
CAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCAAGGAT
GTAGAGAAAGAGGAGCACTTCTCCATTGCTGGTGGGATTGCAAGCTGGTA
TAACTACTCTAGAAACCAGTCTGATGGTTCCTCAGAAAATTGGACATAAT
ACTACCTGAGGACCTAGCTATACTATCTTCCTGGGCATATACCCAGAAGA
TACTCCAACATGTAATAATGACACATGCTCCACTATGTTCATAGCAACCA
TATTTGTAATAGCCTGAAGATGGAAACAGGCCAGATGCCCTTCACAGAGG
AATGGATACAGAAAATGTGTTACATTTACCCAAAAGAATATTATCTGGGT
ATTTTATAAAGCGGACTCCTGGAAATTCTCACGTGAAAGGGGGGGTTTTT
TACATATTATCCCCGGTGGCACAGGCCCTCTTCTACTCACTCCACTTGTG
GTCCCCCTCTTACTTCCACGATAATACATTAATAAGCGTTGCCATACCTT
AACCCACCCTCTTCTTAATTTCTCCTCCCCCCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_h17.b1 MSMg01no435_h17.b1 CHROMAT_FILE:
MSMg01no435_h17.b1 PHD_FILE: MSMg01no435_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:14 2005
         (352 letters)



>mm_chr11_93044456_93045208
          Length = 753

 Score =  611 bits (316), Expect = e-179
 Identities = 340/348 (97%), Gaps = 1/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattccaatctgtcacc-acagtggggttggggactttagaaacacacagaagagtga 64
           ||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggaattccaatctgagaccaacagtggggttggggactttagaaacacacagaagagtga 494

                                                                       
Query: 65  caaaggacccatttgtagatctggaatgtcaccagctccaagttgttcagtgtgaatcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaaggacccatttgtagatctggaatgtcaccagctccaagttgttcagtgtgaatcta 434

                                                                       
Query: 125 gggagtggaggtagcaacatgtaccagattccctggcatctgaattcctgtgtggtacag 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 433 gggagtggaggtagcaacatgtaccagattccttggcatctgaattcctgtgtggtacag 374

                                                                       
Query: 185 cgtctagatgtttctattgtacttgatgttcctgaaagcatgaccagctctagaaaacag 244
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 373 cgtctagatgtttctattgtacttgatgttcctgaaggcatgaccagctctagaaaacag 314

                                                                       
Query: 245 atccagaaaccattaagtggattgacaaagaatatacttctgtgctagagaaaaatgggt 304
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 313 atccagaaaccattaaatggattgacaaagaacatacttctgtgctagagaaaaatgggt 254

                                                           
Query: 305 taaaaatccaggaagccctttgatgtcttcacagtcccctgctctgag 352
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 253 taaaaatccaggaagccctttgatgtcttcaccgtcccctgctctgag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 753
Length adjustment: 9
Effective length of query: 343
Effective length of database: 744
Effective search space:   255192
Effective search space used:   255192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)