BAC Information

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BAC

Clone NameMSMg01-435I05
Chromosome11 (Build37)
Map Location 7,530,462 - 7,530,958
singlet/doubletsinglet
Overlap genenone
Upstream geneWap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435I05.T7 (MSMg01no435_i05.b1)MSMg01-435I05.TJ (MSMg01no435_i05.g1)
ACCAG526800AG526801
length754758
length of high quality
(start - end)
500 (48 - 547)375 (77 - 451)
definitionCHROMAT_FILE: MSMg01no435_i05.b1 PHD_FILE: MSMg01no435_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:17 2005CHROMAT_FILE: MSMg01no435_i05.g1 PHD_FILE: MSMg01no435_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTCAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCACTTTCCTGCAGATTGATTTTTCTAAACAAATTTAACAAG
CAGATGAACAATAAGCTGCCATATTAGTGGCTGTACATTTGGTCAGTGAG
AGCTTCAGCATTGCCCCCCATTAACTGTCTTTGCTTTTGTCCTTCCTGTA
ATAATGGGACACTAGTGAATGCAACCATCCTCTTACTTAGGTGACTGACA
ATACCCTAGGTAGTGCTGTAAAGTAAGTTTCCAGTGACTAAGCCTCCCTC
TGTGGTTGTAACAACTCTATGGAGCCATCAGGAAGAAGTTAAAGAAAAAT
TGCTCAAGGCAGAAATGACTAGACAAAATGGGTGCTTAGGCAACTGGCCA
AGAGCCCATATGTTAGACAATCTGTTGGATGGTGTCAGATGACAAAGGAT
CTCAGGCCTAGATTTAACTTGAAATTGTCATTACCTACTCTAATTCATAA
TGCAATCCCTGATCTCTCTATAACAATGGGTCCAAGTGGCATGTGGGTCT
GGGTTTACTTAGAGCAGTAGCTCTCAACTCTTTTAATGCTTTGACCCTTT
AATGCCGTTCCTCCTGTTTGAATGAACCCCCCATCATAAAAACACTTTTG
GTTACACCTTATTGCCCTCCATTTGTTTGTNGTATGTTACGCGATATACA
AAACCCCCTCTTCCCCCTTCCCTTTTTCCCCTTTCTCATTTTTCCCTTTT
CCCG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGTTACCTATTCAGTA
ACATTCAAATTTACTTCTAGTAGAGACAGTGAAACTAATTAGGCATTACA
AAGAATGGAGCTAAAATAGCTCAGGGCTAGTCTGCAGAGTGATTACTTAG
GACAGTAGCCAGTCTCACCCAAACAAGGGAATACACAATGGTCTAGCTAA
TAGGTGGGTTTACCATTAACAGTTAGGGAATCCCACTGAGACAGGAATCT
TCACTACAGCCAGGTATTGCGGGCTATATTGCATATTAGAAGCAAGTTGG
TGAATTCTTCTGACAAATGGAGATTCTCCACAGATACTTAAAAGAACAGC
CAAGTTACACTCATACAAGAATTTATCAAGGCCTAGAAAATAGGGGTTGT
GGTGTTACATTATTCATGAGAAGGTCTGCTAGAGCAGAAACCCCTGGTGC
TAGCTTTTCCCAGGGCTCTAAGAGTATCCCTATGTGTGACTAGGGCTGGG
AATCCTTTCCTGGTTTTACCTGATTCTTAGGCGGGGTGCTTCCTTCTTTG
CTGAGACAGCACCCTGTGTCTTTTTTTTCTGTCTTCCTTTTGCCCCTTTT
TCTTCTCTTTTTATTTTTGCTTGCTCTACGTTGCGCGCGCCTTTGACCCC
ACTTTTTGTTTTTTTCCCCCCCCCTGTTTATTTTCTCCCCTGCGCCGGCT
GTATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_i05.b1 MSMg01no435_i05.b1 CHROMAT_FILE:
MSMg01no435_i05.b1 PHD_FILE: MSMg01no435_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:17 2005
         (500 letters)



>mm_chr11_7530259_7531158
          Length = 900

 Score =  946 bits (489), Expect = 0.0
 Identities = 495/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagcactttcctgcagattgatttttctaaacaaatttaacaagcagatgaaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcactttcctgcagattgatttttctaaacaaatttaacaagcagatgaaca 263

                                                                       
Query: 64  ataagctgccatattagtggctgtacatttggtcagtgagagcttcagcattgcccccca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 ataagctgccatattagtggctgtacatttggtcagtgagagcttcagcgttgcccccca 323

                                                                       
Query: 124 ttaactgtctttgcttttgtccttcctgtaataatgggacactagtgaatgcaaccatcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaactgtctttgcttttgtccttcctgtaataatgggacactagtgaatgcaaccatcc 383

                                                                       
Query: 184 tcttacttaggtgactgacaataccctaggtagtgctgtaaagtaagtttccagtgacta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttacttaggtgactgacaataccctaggtagtgctgtaaagtaagtttccagtgacta 443

                                                                       
Query: 244 agcctccctctgtggttgtaacaactctatggagccatcaggaagaagttaaagaaaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcctccctctgtggttgtaacaactctatggagccatcaggaagaagttaaagaaaaat 503

                                                                       
Query: 304 tgctcaaggcagaaatgactagacaaaatgggtgcttaggcaactggccaagagcccata 363
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 tgctcaaggcagaaatgactagacaaaatgggtgtttaggcaactggccaagagcccata 563

                                                                       
Query: 364 tgttagacaatctgttggatggtgtcagatgacaaaggatctcaggcctagatttaactt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgttagacaatctgttggatggtgtcagatgacaaaggatctcaggcctagatttaactt 623

                                                                       
Query: 424 gaaattgtcattacctactctaattcataatgcaatccctgatctctctataacaatggg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaaattgtcattacctactctaattcataatgcaatccctgatctctctataacaatggg 683

                            
Query: 484 tccaagtggcatgtggg 500
           |||||||||||||||||
Sbjct: 684 tccaagtggcatgtggg 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)