Query= MSMg01no435_p11.b1 MSMg01no435_p11.b1 CHROMAT_FILE:
MSMg01no435_p11.b1 PHD_FILE: MSMg01no435_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:54 2005
(449 letters)
>mm_chr11_42460224_42461075
Length = 852
Score = 791 bits (409), Expect = 0.0
Identities = 438/449 (97%), Gaps = 3/449 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgttgttcaagaaggaaggccctattagtgaaataaatctactccacaagtaa 63
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 652 ggaattctgttgggcaagaaggaaggccctattagtgaaataaatctactccaaaagtaa 593
Query: 64 ccaaaaatattccaacctcttgaactgagaaaataaatgttttc---ttttttttttagc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 592 ccaaaaatattccaacctcttgaactgagaaaataaatgttttctttttttttttttagc 533
Query: 121 cctatgagattaacagtttccattctttatttagtctcctacttaaccccctccgtatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 532 cctatgagattaacagtttccattctttatttagtctcctacttaaccccctctgtatga 473
Query: 181 taactaagccacaaattcattcatcttagagcttgttttcaaagccactcattctaaagc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 472 taactaagccacaaattcattcatcttagagcttgttttcatagccactcattctaaagc 413
Query: 241 tctttataaactcgatatcagttaaggattttcaaagtatcagaaatacttaggaaaaat 300
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 412 tctttataaactcgatttcagttaaggattttcaaagtaccagaaatacttaggaaaaat 353
Query: 301 tgagacccagttcttctccagagatgccatatgcaaatgctatcagatggggacagtgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgagacccagttcttctccagagatgccatatgcaaatgctatcagatggggacagtgcc 293
Query: 361 catgtttaacttccagcagtcactctaatgcatgatgtgccctatggtgagtcatgagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 catgtttaacttccagcagtcactctaatgcatgatgtgccctatggtgagtcatgagct 233
Query: 421 atccagcaatgatgtgaccagtagcaaca 449
|||||||||||||||| ||||||||||||
Sbjct: 232 atccagcaatgatgtggccagtagcaaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 852
Length adjustment: 10
Effective length of query: 439
Effective length of database: 842
Effective search space: 369638
Effective search space used: 369638
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_p11.g1 MSMg01no435_p11.g1 CHROMAT_FILE:
MSMg01no435_p11.g1 PHD_FILE: MSMg01no435_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:54 2005
(447 letters)
>mm_chr11_42285299_42286145
Length = 847
Score = 652 bits (337), Expect = 0.0
Identities = 407/443 (91%), Gaps = 22/443 (4%)
Strand = Plus / Plus
Query: 1 tgattgcatgctgtggccctgattgactgactgaatggtgccttgggaatagaagccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgattgcatgctgtggccctgattgactgactgaatggtgccttgggaatagaagccagg 260
Query: 61 cctgtgtaactgctctcccaccaatgctgaatgcatttgatcttcgtgcctttgcctctt 120
|| ||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct: 261 cccctgtaactgctctcccaccaatgctgcatacatttgatattcctgcctttgcctctt 320
Query: 121 gacaagtctgtgttaagagggtgcagctccctgcattctttatcagtaagctccttcact 180
|||||| |||| |||||||||| ||||| |||||||| |||
Sbjct: 321 gacaagactgtattaagagggtccagct--------------------agctcctttact 360
Query: 181 tgcatagccatacttaatgtataattaaattttccaagttatctttaacttgtgttttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcatagccatacttaatgtataattaaattttccaagttatctttaacttgtgttttca 420
Query: 241 tgaaatgtctggtacacaaattgttgcacttaaagagaagccttaaaatacatttgacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgaaatgtctggtacacaaattgttgcacttaaagagaagccttaaaatacatttgacat 480
Query: 301 aagattcaatacataatatgtaaccacaattttgttaaagggaatttttaaaaatagata 360
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 481 aagattcaatacataatat-taaccacaattttgttaaagggaattttttaaaatagata 539
Query: 361 cacactgatgttactgaatatttatgtgattttttttcaggtcttacatttctattagga 420
||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 540 cacactgattttactgaatgtttacgtgattttttt-caggtcttacatttctattagga 598
Query: 421 atggagtgattatacatttactg 443
|||||||||||||||||||||||
Sbjct: 599 atggagtgattatacatttactg 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
