NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGCCCTTGACTTTCTCAGTGGTGTACCGTGTGACCTGGCAGTG
TAAGCCAAACCATCCTTTTCATCCTTAAGTTGCTTTTGTTAAAAAAAAAT
CACAGTAACAAAATAAAACCAGTACAGTTGTATTAATCAAGTAGCTATAG
GTTAAAACCAAAAAGGAATTTTCAAAAAGGCTGCAAGTGTTCCACCCGAA
AGAAATGTTTGTTTGTTTGTTTGTTTTTGTTTTTGTTTGTTTTTTTCTGT
AGTCTGGCTTACAGTAGCAAAGATGTAAAATAAAAAGTAAGAATTAATCT
ACAGGAGGATAAGCTAATCAACGTGGTACTGCTATGCATTGGGAAAGAGC
CCTTAGGGTAGAAGAACATACTTCTATATTTTCAGTGTTGATGCATCCTC
AGGTTGCATGAAGATACAAAGACTCATGATGGGCTGCGTATGAGAGGGAT
GGGATTTAACTATCTAAATAAGTTTTAAAATTGGAAGAGTAATTCTTGAT
ATTAATACATAAATTCGCATGCAGTAAAATTATAAGAAAATACGGACAAT
GAGGATGAGCGCTGTCTTCGTTTGGTTGAGTTTAACAAGTCTATCGTTGA
CTGGCTGGCTTCCACAGTGCAGATTTCTCATAAGTTCCATATGAATGTGC
TGTCAGATCTGGAGTCTTGTGAGGACTCTTCTGTGTCCTCTGAGGATAAT
TTT

CGATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGACATAGCTAAGCCTTCTCCAGTGT
TCCAATGTCCTAGAAAATCCTTGAAGCCAACAAACTTGGATATTCAGTAG
GAATTCAGTAAGAATGTTATCTATTCAGTAACATTCGAATTTACTTCGAG
TAGAGACAGTGAAACTTATTAGGCATTACAAAGTACGGAGCTAGAATAGA
TCAGGGTTAGTCTGTAAAGTGATTACTTATGACAGTACTCAGTCTCACCC
AAACTAGGGAATACACTATGTTTCTTATTTAATATGTGCCCTTTCCATGT
ACGAGTTAGGTAATCCCACTGAGACAGGAATCCTCACTACAGCCAGGTAT
ATCATGGTACATCGCTTATTATCAAGCAATGCTGTTGAATTCTTTCGACA
AATGAATTTTTCTCCCCATACACCTAATATTATGAGCCGTTGTTTCCCCT
TCTTATTACACCTTTACCCACCTCCTATTATTTTATGCGCCTCTTGTTTA
TTTGCGTCTTATTTATGTATTCAGTCCTCGTCATAATTAGTCCCCTTGTG
TTGTATATTCTTCCCTCAATTTCTACCATCTCTTTATATTAATTTTCATC
TTGTTCTCTCCTCTCCTTCCCCCATTCTTTTTTTTACCCCTCTTTCACAG
TTTTCTATACTCCTCCTGTGTCTTCTTTCCTCTGTTACATTTTATCACGT
GCCTTTATCCCTTTTTTCCTCTTCCTCTTTCCATN

Query= MSMg01no436_c19.b1 MSMg01no436_c19.b1 CHROMAT_FILE:
MSMg01no436_c19.b1 PHD_FILE: MSMg01no436_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:10 2005
         (543 letters)



>mm_chr11_109592096_109593038
          Length = 943

 Score =  948 bits (490), Expect = 0.0
 Identities = 529/544 (97%), Gaps = 7/544 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgcccttgacttt-ctcagtggtgtaccgtgtgacctggcagtgtaagccaaa 63
           ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcctgccct-gaattttctcagtggtgtaccgtgtgacctggcagtgtaagccaaa 260

                                                                       
Query: 64  ccatccttttcatccttaagttgcttttgttaaaaaaaaatcacagtaacaaaataaaac 123
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ccatccttttcatccttaagttgcttttgttaaaaaaaa-tcacagtaacaaaataaaac 319

                                                                       
Query: 124 cagtacagttgtattaatcaagtagctataggttaaaaccaaaaaggaattttcaaaaag 183
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 cagtacagttgtattcatcaagtagctataggtcaaaaccaaaaaggaattttcaaaaag 379

                                                                       
Query: 184 gctgcaagtgttccacccgaaagaaatgtttgtttgtttgtttgttt----ttgtttttg 239
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 380 gctgcaagtgttccacccgaaagaaatgtttgtttgtttgtttgtttgtttttgtttttg 439

                                                                       
Query: 240 tttgtttttttctgtagtctggcttacagtagcaaagatgtaaaataaaaagtaagaatt 299
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 tttgtttttttctgtagtctggcttacagtagcaaagaagtaaaataaaaagtaagaatt 499

                                                                       
Query: 300 aatctacaggaggataagctaatcaacgtggtactgctatgcattgggaaagagccctta 359
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 aatctacaggaggataagctaatcaacgtgatactgctatgcattgggaaagagccctta 559

                                                                       
Query: 360 gggtagaagaacatacttctatattttcagtgttgatgcatcctcaggttgcatgaagat 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 560 gggtagaagaacatacctctatattttcagtgttgatgcatcctcaggttgcacgaagat 619

                                                                       
Query: 420 acaaagactcatgatgggctgcgtatgagagggatgggatttaactatctaaataagttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acaaagactcatgatgggctgcgtatgagagggatgggatttaactatctaaataagttt 679

                                                                       
Query: 480 taaaattggaagagtaattcttgatattaatacataaattcgcatgcagtaaaattataa 539
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 680 taaaattggaagagtaattcttgatattaatacataaattcgtatgcagtaaaattataa 739

               
Query: 540 gaaa 543
           ||||
Sbjct: 740 gaaa 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)