BAC Information

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BAC

Clone NameMSMg01-436G11
Chromosome11 (Build37)
Map Location 19,429,547 - 19,602,726
singlet/doubletdoublet
Overlap geneLOC100042708
Upstream geneMeis1, LOC635455
Downstream geneGlns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436G11.T7 (MSMg01no436_g11.b1)MSMg01-436G11.TJ (MSMg01no436_g11.g1)
ACCAG527480AG527481
length749742
length of high quality
(start - end)
216 (80 - 295)529 (174 - 702)
definitionCHROMAT_FILE: MSMg01no436_g11.b1 PHD_FILE: MSMg01no436_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:28 2005CHROMAT_FILE: MSMg01no436_g11.g1 PHD_FILE: MSMg01no436_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,602,511 - 19,602,726)(19,429,547 - 19,430,075)
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCAGAAATATTTCTGAAATGTTTTGGATTCAGCTCCTGGTTTTTG
GAGATGAGAATTACCTCAGTTTTGGTAAAAATAATTACTAATAGTGGTTC
TTTCTAGCAGATATACCTTTTAGATAGATGATATATGATAACTTTGCTTC
GTTTCTTTTCCACTCCAGGGAGAGCTTGGCATTACTCAGAGAAGCATCAT
CACACGTCAGGGTGGTACAGAACTCAGAGACTCCTGATCACCAGGTAGTG
ATTTGGCCCCAGGAAAGCCTTTTATTTATATGCTGAGGCACACTACTGGA
TGCTGTGATGCTGGTTCATGGGTCTCATACTTGATAGGCCCTTTTGTCCA
ATGAAAGGGTAGCAGATGAGGGTATCATATGAAACAGCCTTCAGGCTGAG
ACTCTTACTTTCCAATAAGCACAGCAAACTCAATGGATGAGTAGGAGTCA
GGGTGGGGCTGCCCGGCGGCACCTGTTAAGCACAGACCCCCCATCCTTAT
AAATATATACTCTTTGTGCTCAGAGCCTGCTTTCCTGTTGGCATAATTCT
ACAGGATTCTTGACTGTTTACGGAACCCTGTTGAATTCCACTCGGATGTT
CGATTATGATTGATAATTTTATTTTGATGTTCATGATTGACTGCGTTTAG
CTCAATTATTTCGCCGTAATTTCCTCTCTTATTAATTTCTTTCCCCCTC
NCCGATGATATNGGTAGCCTGGGCGGCGCCTGGCTTCAACATATAGGTGA
CCTATNAAAGTTTCCCCGAAATCATAAGGGAATTAGCCGGCGGCAAACAA
AGAAAGACAAAATTAAATCAGCCATCAAATTGCACCAAGGAATTTTAATT
TACAGGTTAATGGTAGGATTATGTAACTAATCACAGCTAACATTTTCAAT
GAACAGCCAATAAAATTCTGCCCGTTTTTTTTCTTTCTAATCTCACTAAT
GGTATCCCAATAACATATCTTTATTACTCTATAGTATGCTTAAAATGGGT
CTCAAAAAACTCTAAGTCTTTCTGATCATCAGAAACAGGGAAGAAACTGT
TTTGAAATAATCCATCAAAAGTGTGGACCTAGAAAGAGCCAGGCGCTCCT
CAGTGCAGCCCAGAGCTTATAATATCTGGGCGAGTTTGCATAAAACAGAT
TTACATAACCATATAGCTTTAAAGCCTATGTATGTCTCTCATGCAGGCAG
GGAGCTCAAATGAGACAAAAGAGACTAAATTAAAGATGTGAAACTAATTT
GGAGCACAAAGTATATCAGCTAATTCTAAATAAAACCACTGCCATGGATT
TATATGTCAATATTGCAGACATATCCAATGACAGACACACCAGGGCTGCA
CTAACAGGGTTTTCATGGTTTATAAATGTGAACATCATAACAAGAAATAA
GGTTTCTGGGCTAAAAAGTTGATTAGCATTCCCCCCGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_g11.b1 MSMg01no436_g11.b1 CHROMAT_FILE:
MSMg01no436_g11.b1 PHD_FILE: MSMg01no436_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:28 2005
         (216 letters)



>mm_chr11_19602311_19602926
          Length = 616

 Score =  387 bits (200), Expect = e-112
 Identities = 212/216 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggattcagctcctggtttttggagatgagaattacctcagttttggtaaaaataattact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggattcagctcctggtttttggagatgagaattacctcagttttggtaaaaataattact 357

                                                                       
Query: 61  aatagtggttctttctagcagatataccttttagatagatgatatatgataactttgctt 120
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 356 aatagtggttctttctagcaaatataccttttagatagatgatatctgataactttgctt 297

                                                                       
Query: 121 cgtttcttttccactccagggagagcttggcattactcagagaagcatcatcacacgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 296 cgtttcttttccactccagggagagcttggcattactcagagaagcatcatcacatgtca 237

                                               
Query: 181 gggtggtacagaactcagagactcctgatcaccagg 216
           |||||||||||||||||||||||||| |||||||||
Sbjct: 236 gggtggtacagaactcagagactccttatcaccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no436_g11.g1 MSMg01no436_g11.g1 CHROMAT_FILE:
MSMg01no436_g11.g1 PHD_FILE: MSMg01no436_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:28 2005
         (529 letters)



>mm_chr11_19429347_19430275
          Length = 929

 Score = 1015 bits (525), Expect = 0.0
 Identities = 528/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactaatcacagctaacattttcaatgaacagccaataaaattctgcccgttttttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactaatcacagctaacattttcaatgaacagccaataaaattctgcccgttttttttc 260

                                                                       
Query: 61  tttctaatctcactaatggtatcccaataacatatctttattactctatagtatgcttaa 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctaatctaactaatggtatcccaataacatatctttattactctatagtatgcttaa 320

                                                                       
Query: 121 aatgggtctcaaaaaactctaagtctttctgatcatcagaaacagggaagaaactgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgggtctcaaaaaactctaagtctttctgatcatcagaaacagggaagaaactgtttt 380

                                                                       
Query: 181 gaaataatccatcaaaagtgtggacctagaaagagccaggcgctcctcagtgcagcccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaataatccatcaaaagtgtggacctagaaagagccaggcgctcctcagtgcagcccag 440

                                                                       
Query: 241 agcttataatatctgggcgagtttgcataaaacagatttacataaccatatagctttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcttataatatctgggcgagtttgcataaaacagatttacataaccatatagctttaaa 500

                                                                       
Query: 301 gcctatgtatgtctctcatgcaggcagggagctcaaatgagacaaaagagactaaattaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctatgtatgtctctcatgcaggcagggagctcaaatgagacaaaagagactaaattaa 560

                                                                       
Query: 361 agatgtgaaactaatttggagcacaaagtatatcagctaattctaaataaaaccactgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgtgaaactaatttggagcacaaagtatatcagctaattctaaataaaaccactgcc 620

                                                                       
Query: 421 atggatttatatgtcaatattgcagacatatccaatgacagacacaccagggctgcacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggatttatatgtcaatattgcagacatatccaatgacagacacaccagggctgcacta 680

                                                            
Query: 481 acagggttttcatggtttataaatgtgaacatcataacaagaaataagg 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagggttttcatggtttataaatgtgaacatcataacaagaaataagg 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)