Query= MSMg01no436_m16.b1 MSMg01no436_m16.b1 CHROMAT_FILE:
MSMg01no436_m16.b1 PHD_FILE: MSMg01no436_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:58 2005
(582 letters)
>mm_chr11_45900325_45901312
Length = 988
Score = 1038 bits (537), Expect = 0.0
Identities = 571/585 (97%), Gaps = 8/585 (1%)
Strand = Plus / Minus
Query: 5 gaattaggctactgttcacacaaccctgtaacatcaggtgttcacagg----taaaggct 60
|||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 788 gaattaggctaccgctcacacaaccctgtaacatcaggtgttcacaggtaaataaaggct 729
Query: 61 ttagtgtaagactcaataactgcaaatatttccattcagttggaaaacaataaccccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttagtgtaagactcaataactgcaaatatttccattcagttggaaaacaataaccccagg 669
Query: 121 tttccattaaatgtaaacggtgccacctagaactccccaggacaggaagtgtatctgaaa 180
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttccattaaacgtaaagggtgccacctagaactccccaggacaggaagtgtatctgaaa 609
Query: 181 ggcagactgttactctaacgaaatggcctgtgctacttcacattttgggcagaattagaa 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggcagactgttactctaatgaaatggcctgtgctacttcacattttgggcagaattagaa 549
Query: 241 aaaa--aaatcatacgtataattttcttttatgttggttctccagtagggtaaacgtaag 298
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaaaagaaatcatacgtataattttcttttatgttggttctccagtagggtaaacgtaag 489
Query: 299 gagagaaaaagaaccaag-ttttccaaatcagcctgcactttgcttggtctacctctgac 357
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gagagaaaaagaacc-agattttccaaatcagcctgcactttgcttggtctacctctgac 430
Query: 358 tctaaaggaatggaaacagatttgcaaaagccccattgccaaataaggcactgatctttc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctaaaggaatggaaacagatttgcaaaagccccattgccaaataaggcactgatctttc 370
Query: 418 aggggctcacaagcaccagcattcctttgtgagggctcagaagggccctggaaggctgaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aggggctcacaagcaccagcattcctttgtgagggctcagaagggccctggaaggctgaa 310
Query: 478 ggttgctcctattgtgaagagctgagccctcctcccatttgagcaaggcccctgttgtct 537
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggttgctcctatagtgaagagctgagccctcctcccatttgagcaaggcccctgttgtct 250
Query: 538 cggggaccaacctaagcaagatggtaccacccaccagcccagctc 582
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cggggaccaacctaagcaagatggtaccacccaccagcccagctc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 988
Length adjustment: 10
Effective length of query: 572
Effective length of database: 978
Effective search space: 559416
Effective search space used: 559416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_m16.g1 MSMg01no436_m16.g1 CHROMAT_FILE:
MSMg01no436_m16.g1 PHD_FILE: MSMg01no436_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:58 2005
(509 letters)
>mm_chr11_45839958_45840861
Length = 904
Score = 870 bits (450), Expect = 0.0
Identities = 493/510 (96%), Gaps = 7/510 (1%)
Strand = Plus / Plus
Query: 1 tcagaaacttgagacatggatcaaggtcaaagccaagaccaggtttatgcctgcaacagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaaacttgagacatggatcaaggtcaaagccaagaccaggtttatgcctgcaacagc 260
Query: 61 agtagctttcaaactgtttcaggttggagaagctcaattaacaactgcaggcttacttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagctttcaaactgtttcaggttggagaagctcaattaacaactgcaggcttacttct 320
Query: 121 tgatcttggcatggtaggcaatgggtgtaaatacaacaga-gacatcgctgtggtgtggt 179
|||||||||| |||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 321 tgatcttggcgtggtaggcaatgggtgtaaatacaac-gaagacattgctgtggtg---- 375
Query: 180 gagttttcttcttctgtgaaaaacattgaaggttgatgttatgtacatgagtgcctgcct 239
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 376 -agttttcttcttctgtgaaaaacatcgaaggttgatgttatgtacatgagtgcctgcct 434
Query: 240 gcatgtatatctgggtactgcatgcatgcctgctgcctgtaagggtctgaagagggtgtc 299
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 435 gcatgtatacctgggtactgcatgcatgcctgctgcctgtaggggtctgaagagggtgtc 494
Query: 300 agatccccaggaactggacttacagatggctgtgagtcatcatatgagtgctgagaaccg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agatccccaggaactggacttacagatggctgtgagtcatcatatgagtgctgagaaccg 554
Query: 360 agcccaggtcctctgccagagcagcacatgctgttaactactgagccatcatcggccctc 419
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 555 agccccggtcctctgccagagcagcacatgctgttaaccactgagccatcatcagccctc 614
Query: 420 aatcagcacattttaaactctgtttcagactctgtggtatgcagtcgaaaccagattgag 479
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 615 aatcagcacattttaaactctgtttcagactctgtggtatgcaggcgaaaccagatcgag 674
Query: 480 tatgattttgccaaaactgaatgtaagaag 509
||||||||||||||||||||||||||||||
Sbjct: 675 tatgattttgccaaaactgaatgtaagaag 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 904
Length adjustment: 10
Effective length of query: 499
Effective length of database: 894
Effective search space: 446106
Effective search space used: 446106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
