BAC Information

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BAC

Clone NameMSMg01-436P23
Chromosome11 (Build37)
Map Location 112,566,095 - 112,764,428
singlet/doubletdoublet
Overlap geneBC006965, Sox9
Upstream geneLOC629967, LOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047
Downstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436P23.T7 (MSMg01no436_p23.b1)MSMg01-436P23.TJ (MSMg01no436_p23.g1)
ACCAG527933AG527934
length750753
length of high quality
(start - end)		538 (75 - 612)531 (73 - 603)
definitionCHROMAT_FILE: MSMg01no436_p23.b1 PHD_FILE: MSMg01no436_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:13 2005CHROMAT_FILE: MSMg01no436_p23.g1 PHD_FILE: MSMg01no436_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,763,891 - 112,764,428)(112,566,095 - 112,566,601)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGATTGGTTTCCTGATCGATAACCCCTGTCTCTAGATGAAGCG
GACCATTGCCTGGTGCCTTTTTGGTGACTTCACCTAGACTTGCAGAGTTC
TAAAATATATGGGACTCACTCTTCCACTTTTGGCTGTAGGGTCTTCAAGT
GCCTACCTCCATCATGACTTCTTGTTCCTCAGCTTCCAGGAAGCTTGTGG
TCCCCTGCAGGGACAGCTGCAGAAATGGGGACAGATCTCAACAGGCTGAC
AGAGCAGGCAGGGCCAGCACCTATCTTAAGAAGAACCTTAGGCTAGCTGC
CAAGTTTCAGCCAGGAGACAACATCTCTCCTGGAGTTTATAACCCTGCAA
AGGAGGAGCCAATAATGAAAGCTCTCCACACCCTTGACACCACAACATTA
CTCACGAACACAATGCTGTTAATTAGCAGCGGTAAATACCACAGTTATTT
CTTTCTGTCACCCGCTCTCTCAAGAAGCAACTCTGAGACACCCCACCCCC
ACCCCTATTGGTGGGATGGATGGAGCATGTATCCCCACAAATCACTGCAA
GTCTTGCTCAGGGGGGAGTTCCCACAAACTCTTCAAGGGGCTGCTTCATC
AGAGGTATATGTAAGCCTGTCTTGGCTGCCCATCTTCTTGCGCGAAATGT
AGTCTATGGCCCTGTCTTTTCTAAAAACTTCAGTTGGAACCCGTTGCATT


ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTAAATCATGCTCACTCGTATCTCTAA
GTTACATGGTTTAAAACTGCATGGATCCAAAGAAAAAAGGTATCAGGAAT
ATGAGCATTTTCAGAACAAAGAAAGGGCATAAGTAGAAATCTGAATATAT
TGAATAATAAAGAGGAGTGTCCAAGAGAAAAAATTCTCAGCATGCAATTC
TTAAGGGATGATGGGAAAATTGAGCAATAAAATGTCCAAAGAGAGAAGTT
GGCTGCGGAGACTAATTCTACTGAAGTAAACTATCCAATGAGGGCTAAGG
ACAGGCCTCAGTGGGGACAAGTGCTTGCCGTGCACATATGAGGACCTAGG
TCTAAATCCCCAGCACCTATGTAAAAAGCTCCTGTGACCACATGCCTGTC
TAACTCAGGGCTGTTGGGGCAGAGACAGGAGGATTGCTGGGACTTTGGGG
CCATAAGTCTAGATCCAAGTTCAGTGAGAAATCCTGTCTCAAGGAAATTA
GGTGAGGAATGACAGAGTAAGAAACCTGAAATGCAAATCAAAACAACCCT
GAGATTCCCCCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAGGCTTGTACAACCCCTCTGGAAATCCATCTGGCGGTT
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_p23.b1 MSMg01no436_p23.b1 CHROMAT_FILE:
MSMg01no436_p23.b1 PHD_FILE: MSMg01no436_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:13 2005
         (538 letters)



>mm_chr11_112763691_112764628
          Length = 938

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/538 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataacccctgtctctagatgaagcggaccattgcctggtgcctttttggtgacttcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gataacccctgtctctagatgaagcggaccattgcctggtgcctttttggtgacttcacc 679

                                                                       
Query: 61  tagacttgcagagttctaaaatatatgggactcactcttccacttttggctgtagggtct 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagacttgcagagttctagaatatatgggactcactcttccacttttggctgtagggtct 619

                                                                       
Query: 121 tcaagtgcctacctccatcatgacttcttgttcctcagcttccaggaagcttgtggtccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcaagtgcctacctccatcatgacttcttgttcctcagcttccaggaagcttgtggtccc 559

                                                                       
Query: 181 ctgcagggacagctgcagaaatggggacagatctcaacaggctgacagagcaggcagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctgcagggacagctgcagaaatggggacagatctcaacaggctgacagagcaggcagggc 499

                                                                       
Query: 241 cagcacctatcttaagaagaaccttaggctagctgccaagtttcagccaggagacaacat 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cagcaccaaccttaagaagaaccttaggctagctgccaagtttcagccaggagacaacat 439

                                                                       
Query: 301 ctctcctggagtttataaccctgcaaaggaggagccaataatgaaagctctccacaccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctctcctggagtttataaccctgcaaaggaggagccaataatgaaagctctccacaccct 379

                                                                       
Query: 361 tgacaccacaacattactcacgaacacaatgctgttaattagcagcggtaaataccacag 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taacaccacaacattactcacgaacacaatgctgttaattagcagcggtaaataccacag 319

                                                                       
Query: 421 ttatttctttctgtcacccgctctctcaagaagcaactctgagacaccccacccccaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttatttctttctgtcacccgctctctcaagaagcaactctgagacaccccacccccaccc 259

                                                                     
Query: 481 ctattggtgggatggatggagcatgtatccccacaaatcactgcaagtcttgctcagg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctattggtgggatggatggagcatgtatccccacaaatcactgcaagtcttgctcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_p23.g1 MSMg01no436_p23.g1 CHROMAT_FILE:
MSMg01no436_p23.g1 PHD_FILE: MSMg01no436_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:13 2005
         (531 letters)



>mm_chr11_112565895_112566825
          Length = 931

 Score =  880 bits (455), Expect = 0.0
 Identities = 494/507 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaatcatgctcactcgtatctctaagttacatggtttaaaactgcatggatccaaag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaatcatgctcactcgtatctgtaagttacatggtttaaaactgcatggatccaaag 260

                                                                       
Query: 61  aaaaaaggtatcaggaatatgagcattttcagaacaaagaaagggcataagtagaaatct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 aaaaaaggtatcaggaatatgagcattttcagaacaaagaaagggcgtaagtagaaatct 320

                                                                       
Query: 121 gaatatattgaataataaagaggagtgtccaagagaaaaaattctcagcatgcaattctt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gaatatattgaataataaagaggagtgtccaagagaaaaaattcccagcatgcaattctt 380

                                                                       
Query: 181 aagggatgatgggaaaattgagcaataaaatgtccaaagagagaagttggctgcggagac 240
           ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aagggatgatgggaaaattgaacaataaaatgtccaaagagagaagttggatgcggagac 440

                                                                       
Query: 241 taattctactgaagtaaactatccaatgagggctaaggacaggcctcagtggggacaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taattctactgaagtaaactatccaatgagggctaaggacaggcctcagtggggacaagt 500

                                                                       
Query: 301 gcttgccgtgcacatatgaggacctaggtctaaatccccagcacctatgtaaaaagctcc 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttgccgtgcacacatgaggacctaggtctaaatccccagcacctatgtaaaaagctcc 560

                                                                       
Query: 361 tgtgaccacatgcctgtctaactcagggctgttggggcagagacaggaggattgctggga 420
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct: 561 tgtgaccacatgcctgtctaactcagggctgtcggggcagaggcaggaggatttctggga 620

                                                                       
Query: 421 ctttggggccataagtctagatccaagttcagtgagaaatcctgtctcaaggaaattagg 480
           |||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| 
Sbjct: 621 ctttggggccataagtctagatacaatttcagtgagaaatcctgtctcaagggaattaga 680

                                      
Query: 481 tgaggaatgacagagtaagaaacctga 507
           |||||||||||||||||||||||||||
Sbjct: 681 tgaggaatgacagagtaagaaacctga 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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