BAC Information

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BAC

Clone NameMSMg01-437A02
Chromosome11 (Build37)
Map Location 100,943,551 - 100,943,889
singlet/doubletsinglet
Overlap genenone
Upstream geneKrt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1
Downstream geneCoasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437A02.T7 (MSMg01no437_a02.b1)MSMg01-437A02.TJ (MSMg01no437_a02.g1)
ACCAG527939AG527940
length764735
length of high quality
(start - end)		345 (54 - 398)422 (89 - 510)
definitionCHROMAT_FILE: MSMg01no437_a02.b1 PHD_FILE: MSMg01no437_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:14 2005CHROMAT_FILE: MSMg01no437_a02.g1 PHD_FILE: MSMg01no437_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCGGCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTATAGAATTCCCAGACTTCGCCTCTAGGTGTCCCAAA
ACACTCAGAAAACCAATTTCCTGTGTGTGAAATGGGGATGTGGGTAGAGA
TATCTAGTAGCATCGCTGGGAACATTGGCTCAGAACAAGCACAGCAAAGC
GATCGGACTGTTCCCGATCCTGGCTTTGCCACCTCCTCCTGGCAAACTGG
AAGAAGCAAACAACACCGGGAATCCGCGAAAAGGGCTTTGCAGCTCTCTC
TGCTCGCTTCGTCTAAGTGGATTCGGTGCCAGTGTTTCGCTCAGCCCGGA
AGCCTCTGCCTTCGGCCCCGCCCCGCCCCGCCCCGCCCCGCCCCGTCTCG
CCTCGTCTCTCCCCAGTAGTCTCTCGGCGACGCTTTGTTTGATCGCTCTC
ACTCCTCCTACCCTCCCCCTTTCCACCCCTGTCGCTTATTGTTTCCTCGC
CGTCTCCTTAGCTTCCCGCTCGTTCCTGCTTTTTCCCCCTTACCTTTTTC
ACCCCCCTGTTTCCCCTCCTCTCCCTTTTCCTCCCCCCCCCCTCTTTTTC
CTTCTCCTCCCCTCTCCCCCCCTTTATCTTCCCTTCCTTCCTTCCTCCCC
TTCCCCCCTCCTTCCTCCTTCTCCCTTTTCCGCTCTCTTTTTTATGACCC
CCTCCCCCCCCCCCCCTTTCCCCCTTTTTCCTTTTCTCCTCTTCTCTTTC
CTCTCCTCCTTTCN

GAACCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGGTGCAAA
GGGTTGAACTCCGGTCCCCAGGCTCGGCAGCAAATGCCTTTACCCAGTGA
GCCTTATTGCCAGGTCATAGTTCTAGTTCTGGAAAAGATTATCAGTGAAT
AGACAGTAGCAACAGGTGCTAGGTGTGCTGACACACACTTTTAGGCAGAG
GCAAGAGGATCTCTGAATTCGTGGACAGTCAGGGTTATACAGAGAAACCC
TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTGCTTGCTTGC
TTGCTTGCTTGCTTTCTTTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTT
GGTTTTTCGAGACCCGTTTTCTTTGCACGGCCCTGGCTGTCCTGGAACTC
ATTCTGTACCCTATTCTGCCTTTTGACTTAGAAATCTGCCTGCCCTTGCT
TTCTTAGCGCTGCCACTTACGTTCTGCCTCTCCCCTCCTCCCGTGCTATA
CTCCCACTCCTTTCCAAACCTCCATCCTTAACTTTCCCTGTCCATCCCCT
TGCCCTCCTCTTTTCTTCTTTCCTCTTCCCACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_a02.b1 MSMg01no437_a02.b1 CHROMAT_FILE:
MSMg01no437_a02.b1 PHD_FILE: MSMg01no437_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:14 2005
         (345 letters)



>mm_chr11_100943347_100944092
          Length = 746

 Score =  594 bits (307), Expect = e-174
 Identities = 331/339 (97%), Gaps = 1/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatagaattc-ccagacttcgcctctaggtgtcccaaaacactcagaaaaccaa 63
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatagaaggcaccagacttcgcctctaggtgtcccaaaacactcagaaaaccaa 264

                                                                       
Query: 64  tttcctgtgtgtgaaatggggatgtgggtagagatatctagtagcatcgctgggaacatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcctgtgtgtgaaatggggatgtgggtagagatatctagtagcatcgctgggaacatt 324

                                                                       
Query: 124 ggctcagaacaagcacagcaaagcgatcggactgttcccgatcctggctttgccacctcc 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 ggctcagaacaagcacagcaaagcgatccgactgttcccgatcctggctttgccacctcc 384

                                                                       
Query: 184 tcctggcaaactggaagaagcaaacaacaccgggaatccgcgaaaagggctttgcagctc 243
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 tcctggcaaactggaagaagcaaacaacactgggaatccgcgaaaagggctttgcagctc 444

                                                                       
Query: 244 tctctgctcgcttcgtctaagtggattcggtgccagtgtttcgctcagcccggaagcctc 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 tctctgctcgcttcgtctaagtggattcggtgccagggtttcgctcagcccggaagcctc 504

                                                  
Query: 304 tgccttcggccccgccccgccccgccccgccccgccccg 342
           |||| |||||||||||||||||||||||||| |||||||
Sbjct: 505 tgccctcggccccgccccgccccgccccgcctcgccccg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space:   247632
Effective search space used:   247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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