Query= MSMg01no437_a23.b1 MSMg01no437_a23.b1 CHROMAT_FILE:
MSMg01no437_a23.b1 PHD_FILE: MSMg01no437_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:18 2005
(533 letters)
>mm_chr11_18851002_18851937
Length = 936
Score = 969 bits (501), Expect = 0.0
Identities = 524/533 (98%), Gaps = 3/533 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttctttgtcacagataacacgttcaattaagcatctatcacttcatgattct 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttctttggcatagataacacgttcaattaagcatctatcacttcatgattct 263
Query: 64 ctactgtcaacacaaataatgtataaaatgtaatggggtgggaaatgtggagagaaacca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctactgtcaacacaaataatgtataaaatgtaatggggtgggaaatgtggagagaaacca 323
Query: 124 accaagtaactaagatccaggatgaaaatgtttatgaactttggtgaaacacacagacac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accaagtaactaagatccaggatgaaaatgtttatgaactttggtgaaacacacagacac 383
Query: 184 aaaaacattccaaacccttaaagtgcatttggtggaattaaacacagttttgtaaagccc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 aaaaacattccaaacccttaaagtgcatttggtggaattaaacacagttttgtagagccc 443
Query: 244 ctacaggacagatgcaaacactgtccagttatgagctcacattggtaccgaacttttacc 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctacaggatagatgcaaacactgtccagttatgagctcacattggtaccgaacttttacc 503
Query: 304 caagattaagtcagaatgacaaatatttctatgggttagtgttcactgaagtcaggtact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagattaagtcagaatgacaaatatttctatgggttagtgttcactgaagtcaggtact 563
Query: 364 gtggacagatgtaacataaacttagaaatcaaacagcttttcagtgcccccccc---act 420
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 564 gtggacagacgtaacataaacttagaaatcaagcagcttttcagtgcccccccccccact 623
Query: 421 ctcttgaatcactgtatttggttcttttaagcaagaatatttttttctttttaagaaacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcttgaatcactgtatttggttcttttaagcaagaatatttttttctttttaagaaacc 683
Query: 481 aaatatggtattttaactttattctccctttaggggagctgcatcaaattatt 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaatatggtattttaactttattctccctttaggggagctgcatcaaattatt 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 936
Length adjustment: 10
Effective length of query: 523
Effective length of database: 926
Effective search space: 484298
Effective search space used: 484298
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_a23.g1 MSMg01no437_a23.g1 CHROMAT_FILE:
MSMg01no437_a23.g1 PHD_FILE: MSMg01no437_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:18 2005
(466 letters)
>mm_chr11_18915873_18916736
Length = 864
Score = 886 bits (458), Expect = 0.0
Identities = 464/466 (99%), Gaps = 2/466 (0%)
Strand = Plus / Minus
Query: 1 tggagctcttactgttaaaattaatttttacaacagaacgctcaactttagagatgtaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tggagctcttactgttaaaattaatttttacaacagaacgctcaactttagagatgtaag 605
Query: 61 gccagggaattcgggttgaaggatcctgttgtactgatctaagctcggtgccctaacgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gccagggaattcgggttgaaggatcctgttgtactgatctaagctcggtgccctaacgtt 545
Query: 121 cccggttacccgcctggcctctgacccttctttttctctcctgtttgtcatgcagtacga 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 544 cccggttacccgcctggcctctgaccctt-tttttctctcctgtttgtcatgcagtacga 486
Query: 181 cgacctaccccattatgggggtatggatggagtaggcatcccctccacgatgtatgggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgacctaccccattatgggggtatggatggagtaggcatcccctccacgatgtatgggga 426
Query: 241 cccgcatgcagccaggtccatgcaaccggtccaccacctgaaccacgggcctcctctgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cccgcatgcagccaggtccatgcaaccggtccaccacctgaaccacgggcctcctctgca 366
Query: 301 ctcgcatcagtacccgcacacagctcacaccaacgccatggcccccagcatgggttcctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctcgcatcagtacccgcacacagctcacaccaacgccatggcccccagcatgggttcctc 306
Query: 361 ggtcaatgacgctttaaagagagataaagatgccatttatgggtaggtataatgggcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggtcaatgacgctttaaagagagataaagatgccatttatgggtaggtataatgggcagg 246
Query: 421 agttaaggagttgaggcgcgatgcttcccccatttcccaagccctt 466
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 245 agttaaggag-tgaggcgcgatgcttcccccatttcccaagccctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 864
Length adjustment: 10
Effective length of query: 456
Effective length of database: 854
Effective search space: 389424
Effective search space used: 389424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
