BAC Information

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BAC

Clone NameMSMg01-437H10
Chromosome11 (Build37)
Map Location 102,416,186 - 102,416,687
singlet/doubletsinglet
Overlap genenone
Upstream geneNbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1
Downstream geneLOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437H10.T7 (MSMg01no437_h10.b1)MSMg01-437H10.TJ (MSMg01no437_h10.g1)
ACCAG528290AG528291
length765744
length of high quality
(start - end)
505 (51 - 555)89 (80 - 168)
definitionCHROMAT_FILE: MSMg01no437_h10.b1 PHD_FILE: MSMg01no437_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:52 2005CHROMAT_FILE: MSMg01no437_h10.g1 PHD_FILE: MSMg01no437_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCGTCCCTATTCCTTGATTTTTTTTTTTTCTTTCTTCGTTTG
CAAATGTTGATCTGGGAAAGATGTCCGTGGGGTGGCAGGCATTAAAGAAA
AAAACAACAAAAACAAAACAAAACAAAAAAACAAACAACAAAGGCCGAAT
TAGAATCATTAGGCTTTTAGATATTGAAATTGTTACTGCAGGCATAGTTG
GGAGACAATAAGGGATTTAGTAGCCTTTGGTTATTTCTAGGTAAAATACA
TCCTCAGTTGCAAATCACTGCATTACTACCGCATCTCCTGGCAACAGCAA
TTTAGGTCAAGGGATGAGCCTCCGAACTCGAGTTTTTGTATTCCTTTCAG
CTTCCTCAACGCACCTCTAGCTGTGTCAGAAGGCAATTTGAAGGGTTTGA
ATTCTTGGAGATGATTGGGTTGATAGACAAAGCAATTTCAACTGGTTTAA
AATCAACACTGTTAAATAGTCTTAGGTGTAGAACGCTATGGGAAGTTTTG
CAGCAGTAAGGGATTTGGGAGTTGCTGAAAATGCCTTGTGGCCATGTGCC
CGCCGCAGAAATTGCAGCCCAGCACAGTATCTTAAGGTGTTTTAAAGATT
TATCCCATGCCTTTCAAAATCTGAAGTGGACACCTTAATCCGCAAAAGTA
AGTTCGATCAAACTTCTTTTCCTTNCCCCCTATCAATAGTCCCGTGTAGT
ATGCCATAAAACCCG
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTGTTGTCTGTCCCCAGG
GAAAGAGAAGGGCTTTGAATCTTCCATCACCAAATTAACATTCACTTNGC
TACCTCCTCTGGCTTGNNTGTTCAGCTGNTACACTCCATGGGCTGGTTNC
ACCTCATCTACTATGATNNNNNNNNNNTGAAAATGNATGNTCCAGAAACA
AAACCTTAAACCCCCTTTGNNNNNCCAAAACTNTAGAAANNNNNTTGNGA
AAAAAGAATTAATTCCATNTTTATTTTACCAAAGNNATNNCCTCCCCATT
GTCTAGACTATACGTTGTGGAGGTCTTTATTTAGTTGATTTTTTAGATTT
ATCTGTTTTTATTTTTTGTTTTGTGTTTTTTTTCGTTTTCGTTTAGGGGG
CGGGGGAGGGGGGGGGGGCGAGGGGGGGGAGGGCGGAGGCGGGGGGGGGG
CGGGGGGGGGGGGGGGGGGGGGTCTNNNTTNTTNTTTTTAATTATAATTT
TTTTTTCTAAAGAGAAGTTGTTGAGACNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNTNTNNNNNNNNNNNN
NNNNTNNNNNNNNNNNNNNNNNTTNTNTNTTTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_h10.b1 MSMg01no437_h10.b1 CHROMAT_FILE:
MSMg01no437_h10.b1 PHD_FILE: MSMg01no437_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:52 2005
         (505 letters)



>mm_chr11_102415851_102416755
          Length = 905

 Score =  936 bits (484), Expect = 0.0
 Identities = 497/502 (99%), Gaps = 2/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcgtccctattccttga--ttttttttttttctttcttcgtttgcaaatgttgatct 63
           ||||||| ||||  ||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 837 aattcgttcctaaaccttgattttttttttttttctttcttcgtttgcaaatgttgatct 778

                                                                       
Query: 64  gggaaagatgtccgtggggtggcaggcattaaagaaaaaaacaacaaaaacaaaacaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gggaaagatgtccgtggggtggcaggcattaaagaaaaaaacaacaaaaacaaaacaaaa 718

                                                                       
Query: 124 caaaaaaacaaacaacaaaggccgaattagaatcattaggcttttagatattgaaattgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caaaaaaacaaacaacaaaggccgaattagaatcattaggcttttagatattgaaattgt 658

                                                                       
Query: 184 tactgcaggcatagttgggagacaataagggatttagtagcctttggttatttctaggta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tactgcaggcatagttgggagacaataagggatttagtagcctttggttatttctaggta 598

                                                                       
Query: 244 aaatacatcctcagttgcaaatcactgcattactaccgcatctcctggcaacagcaattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaatacatcctcagttgcaaatcactgcattactaccgcatctcctggcaacagcaattt 538

                                                                       
Query: 304 aggtcaagggatgagcctccgaactcgagtttttgtattcctttcagcttcctcaacgca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aggtcaagggatgagcctccgaactcgagtttttgtattcctttcagcttcctcaacgca 478

                                                                       
Query: 364 cctctagctgtgtcagaaggcaatttgaagggtttgaattcttggagatgattgggttga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cctctagctgtgtcagaaggcaatttgaagggtttgaattcttggagatgattgggttga 418

                                                                       
Query: 424 tagacaaagcaatttcaactggtttaaaatcaacactgttaaatagtcttaggtgtagaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tagacaaagcaatttcaactggtttaaaatcaacactgttaaatagtcttaggtgtagaa 358

                                 
Query: 484 cgctatgggaagttttgcagca 505
           ||||||||||||||||||||||
Sbjct: 357 cgctatgggaagttttgcagca 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)