BAC Information

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BAC

Clone NameMSMg01-437L03
Chromosome11 (Build37)
Map Location 44,402,637 - 44,403,339
singlet/doubletsinglet
Overlap genenone
Upstream geneFabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b, Il12b, Ublcp1, 3732413I11Rik
Downstream geneEbf1, LOC382510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437L03.T7 (MSMg01no437_l03.b1)MSMg01-437L03.TJ (MSMg01no437_l03.g1)
ACCAG528467AG528468
length7541,645
length of high quality
(start - end)
643 (51 - 693)---
definitionCHROMAT_FILE: MSMg01no437_l03.b1 PHD_FILE: MSMg01no437_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:10 2005CHROMAT_FILE: MSMg01no437_l03.g1 PHD_FILE: MSMg01no437_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACACTCAATCCACTCTCCTTCATGTCCTGAATTAGGTGG
AGAACCCCAAGTTTCCCCCGCCCCCAGCCTCATCGCCAAATTTACACGTG
CAGGAGTAGATACCAGGGTTCATCCGAGGCACTGAACATGGAAGTAAAAA
TGGAAGCCCAGTGCTAGGTAGGCTGAAACAGGAGAATCTGTGTGAGTTCA
AAGGCATCCTGGGGCCACATAATGAGTTTCAGATCAACTTGGGGGTACAC
AGTGAGACCTCATCCCACAAAAAATCCAAGCCAAACCAAACCAAACCAAG
CCAAACCACACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAA
CCAAACCAAACTAAAACCCACCAAGACCAGGGCTAAAGAGATGACTCATT
CATTGGTTAAGGTCGCCTGTTGCTCTTATAGAGAACAGAGTTCTGTTCCC
AGCACTGAGAAAGTGGTTCATAGCCGCCCATTATTGCTGGCCTCTGAAGG
CACATAGACACACAGGAACACACACACATGCATACACATGCACACATATG
CACACACATGTACACAGACAGGCACACACTGGTACACACACATATAAATG
AATAATAAAATAAATCTTTAAATATCCATTCCCTAACAAAAGTGTTTTCT
AGCAGAAAACATATTAAGCTCTTATGAAGAATTCTTCAGGCTTCCTTGGG
TCCA
CCTTCACCGTATCGTAACAATCAGTACTAGAANCCCCAGCCAACGCACNN
NCCCCNGTACAATAACTATCAACAAGGAGGGGGGGANNNNNNNNNNGNNN
NGTGNAGTGNCCCAACNAAAAAAACGAGGGNGGGNGNNGGAAGAAGAAAA
AAGGNGAGAGAACAGCACGCCCGCGAGAAACCAGCCACGCCGAGACCTTC
TTCTCCTCCCCCCGCGCNAAAANCANANCGACAACTAACGACTCCGCAGA
GACTCGTACTGCTACACCACCGTATTGATTAGTCTCTTCAGTCAGCCCGA
CGCGAGACGACTATCTCCGCGTAACGCTCCGCCAGAGTCATCTAAGCACC
GCTCCAATAGCCAGCGATTGAGCGCAACTTAGTTTGCGAGACAGTCCGCC
GAGCGACGTGCGCACAGCTACATGCTCGCCGTAGCGGGCTCGAACAGTTC
ACANATTATACTGATCCTCTCTGTGCGGAGTCAGCGCCCGCGCTGAACGC
GCACGACGAACACTGCATAACGTCGATTGCCGTGGTGCATAGATANACGC
TAGNAGACCTAGAGCACGNCCATGGCGCTTGTCGCCGCAAGCAGTGGNCC
GCGCGCCGATACCGCTAATCTTGTTTTCTCGTCATAGNCTCANAATCCAG
CGCAGACGCGTTAGAGGCGCGTGCTACTGCGAGACATTTGAGACGATCGA
TGATATTGTTAGCTTCTCGCACCGCGACACCCGCGAANTCACCGTCGTAC
GACGCTCTGATGTCCTGCCGCCACCTCGCTTATGATATTGCATGATCGAT
NGTTCGTCATCGTAGATANTCTCATTATGCCACGCCCCCACCTATGACGT
GAGTTGCCTCCCGTCGGNCTGCTGATTTCGACTCTACCGATGCGACTCAC
GCTATATATTCGCGCAGCGCACGATACTCGTAATGCTGATTCGTGTCTCT
ATATCCTATCGACGCCTTCTTTCTCACATCTACATTATCATCTTCCCGTC
TCTACGCGACGCCCCATACTCTCACAGCCATCATCTGATAGTACTCACAT
ACGACTGTNGCACTCCGCGTAGACTCACGTATCTACCACACCACTCGACC
TCTCTTCTACTGCGTATTACATACATCGAATATCGCACTCCTCTCTCAGC
ACATCTCTNCCAATCATCAGCGCACTACTACACTCTCTATGATATCATAC
GAAATCGCTCACGTACACACGCGCTATGTACCTGCCATCACCTACCCGTC
ATGTANTACTCATCTCTGCCGATGCGCATCATCTCGCGCGACTCGACACT
CGTCGACNACANCGCTGCACCACATGCGATACTACCCAGTGGCGACTAAC
CTCGTNGCTGTAGTGGTATCGAGTGGCTGCGCTGTAAGTANTNCGCAGCG
TAATATACTCATCTACGAGACATCTACGTATCGATGCTCATCATCACANA
NGCTACATGCGCACTCGCAGATATGANGNTATACACTCACAACCTCATGA
TATACTAACGTCACTCGCTCCGCACATCACATACATTCTATACATCTCGA
GCGNACCGCCGCACTACATGCTAGCACNATCATCCTATACTTTTATCACA
TCACTCANTGACGCCGTCGACTATCTCATACGATCTTCGTCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_l03.b1 MSMg01no437_l03.b1 CHROMAT_FILE:
MSMg01no437_l03.b1 PHD_FILE: MSMg01no437_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:10 2005
         (643 letters)



>mm_chr11_44402433_44403475
          Length = 1043

 Score =  917 bits (474), Expect = 0.0
 Identities = 620/706 (87%), Gaps = 70/706 (9%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacactcaatccactctccttcatgtcctgaattaggtggagaaccccaagttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattccacactcaatccactctccttcatgtcctgaattaggtggagagccccaagttt 264

                                                                       
Query: 65  cccccgcccccagcctcatcgccaaatttacacgtgcaggagtagataccagggttcatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccccgcccccagcctcatcgccaaatttacacgtgcaggagtagataccagggttcatc 324

                                                                       
Query: 125 cgaggcactgaacatggaagtaaaaatggaagcccagtgctaggtaggctgaaacaggag 184
           ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 325 cgaggcactgaacatggaaataaaaatgtaagcccagtggtaggtaggcagaaacaggag 384

                                                                       
Query: 185 aatctgtgtgagttcaaaggcatcctggggccacataatgagtttcagatcaacttgggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatctgtgtgagttcaaaggcatcctggggccacataatgagtttcagatcaacttgggg 444

                                                                       
Query: 245 gtaca-cagtgagacctcatcccacaaaaaatccaagccaaaccaaaccaaaccaagcca 303
           ||||| | ||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct: 445 gtacagc-gtgaggcctcatcccacaaaaaaaccaagccaagccaaaccaagccaagcca 503

                                                                       
Query: 304 aacca---ca--ccaaaccaaaccaaaccaaaccaaaccaaaccaaa-c----------- 346
           | |||   ||  ||||||||||||||||||||||||||||||||||| |           
Sbjct: 504 agccaagccaagccaaaccaaaccaaaccaaaccaaaccaaaccaaaacaaaacaaaaca 563

                                                                       
Query: 347 --------caaaccaaaccaaa-ctaaaac-----ccaccaagaccagggctaaagagat 392
                   |||||||||||||| | |||||     ||||||||||||||||| |||||||
Sbjct: 564 aaacaaaacaaaccaaaccaaaac-aaaacaaaaaccaccaagaccagggctgaagagat 622

                                                                       
Query: 393 gactcattcattggttaaggtcgcctgttgctcttatagagaacagagttctgttcccag 452
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 623 gactcattcattggttaaggtcgcctgttgctcttgtagagaacagagttctgttcccag 682

                                                                       
Query: 453 cactgagaaagtggttcatagccgcccattattgctggcctctgaaggcacatagacaca 512
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 683 cactgagaaagtggttcatagccacc-attattgctggcctctgaaggcacatagacaca 741

                                                                       
Query: 513 caggaacacacacaca----------tgca----------ta------cacatgcacaca 546
           ||||||||||||||||          ||||          ||      ||||||||||||
Sbjct: 742 caggaacacacacacacacacacgcatgcacacacacacatatgcacacacatgcacaca 801

                                                                       
Query: 547 tatgcacacacatgtacacag---------acaggcacacactggtacacacacatataa 597
           |||||||||||||||||||||         ||||||||||||||||||||||||||||||
Sbjct: 802 tatgcacacacatgtacacagtgtacacagacaggcacacactggtacacacacatataa 861

                                                         
Query: 598 atgaataataaaataaatctttaaatatccattccctaacaaaagt 643
           ||||||||||||||||||||| ||| ||||||||||||||| ||||
Sbjct: 862 atgaataataaaataaatcttgaaaaatccattccctaacagaagt 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)