BAC Information

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BAC

Clone NameMSMg01-437M06
Chromosome11 (Build37)
Map Location 15,056,266 - 15,056,718
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437M06.T7 (MSMg01no437_m06.b1)MSMg01-437M06.TJ (MSMg01no437_m06.g1)
ACCAG528520AG528521
length930780
length of high quality
(start - end)		---450 (80 - 529)
definitionCHROMAT_FILE: MSMg01no437_m06.b1 PHD_FILE: MSMg01no437_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:16 2005CHROMAT_FILE: MSMg01no437_m06.g1 PHD_FILE: MSMg01no437_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATAACATATATAGATTCGGCAACACGAATTAGCATATCTATATGAGA
CTTCTCAGCCCGTAGTTGTTCGCCATGTGTGGAATTGAGGAGGTATACGG
ATTGATTACAAGAAGAGAGAATGCAAAGGGCAGAGGAACGGTGCGCGGTG
AGAGGGCCAGCGCGTAATCCTACTGATCGGCACCGGTGACGATGGGACTA
GAGTACAGAGAGGGGGCTGTGTGGAGGGCTCGGGCTACCTGGACGGCGGT
TTGCCGTATTGAACGGATTGCGGATATCTTATAACATTCCGCGTATTGTG
GATGATGAGGAGGAGGTAGGGTGAAGGGATAGATATCTGTTTAAAGGTCG
TATGATGTCGAGAGAGAATACTAAGCCGCGTACAAGGGCACGCTACACGT
GCTAGCAGGCGAGCCAGGAATATCGGGGGGACAGACAGGTGATGGCGCTT
GTCGCCCTTTGACTGCATCCTTCTCGCTATCATACTCAAATAACATCGAC
CACAGGGCTCGTCTACGTGAACATGGATACATGATGAACGCTAGCTATTG
TCTCCTGATTCACTCACCGCCTCTCTGTCAATCTTATTTTACCAAAACCC
ACAAGCGTTAAGCTTACGCTACTCGAAGTACTGTCCTTGTGATTTCATTT
GTTACAGCGCCACTCACACCTTATTTATCTCGCGATCATATTAGAAGCAG
AAGCATATCGTCGGTTGTTAACACGCGCCCCCGTTACGTTTTTATAGGTG
CTACTAGCGCGGTATACACATCAATGTGTGAATATCACGTTAGTCGTCGT
GCGTCCGAGTTATTACCATGGGGTGTAGTCCTACACCGTAGTAGCTATAA
CATTTGATAACAGACAGTGTCAANCGACATGAATATAAGCCTTTATTGTT
ATGTAAAAGTCGATGCCTCTAGGCTGTTAT

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGCAATTGTACAATTTTG
TGCAATTTTGGAGATTTGAATACTTCAAGAAATTGTGCATTACTGGAACT
GCATTATCCAGAAAATAAACCAACTATAAGTGAAGACATTTTAGACACTC
AACATAATTGTACAGGTAATACCAAAAATGGCAGTGTTTTAAAAATTATT
TTCTCTATAAATAAAACTCTTAGTTTCATTTTATAGACACACACAATTAA
AATCAGTAGGGAATTTTAATAGAATGGTTTCTCATGACTCATCGCTTCTC
CCTTCATGATTTACACAATTTAGTGTTTTTTTTTAAGAGTTTTATAGTCA
ACATCTCATCAATTATCCAAATATGACCTGGTATACAGTATGTAGTCCAG
GGGGAAGTCATAGAAATCCTACTTCTTCAGCATCCTACATATTCAGGCTG
TATGTGTGATTCTCAGTATATTTACGGTCACTTTGTTGTTTTTCGTCCGC
TGTTTGCCTTGCCCCCTTCTCTTTTTTACCCCTTTCCCCTTCTATTTCCT
CCCTTGCTCTTCCTTCCCTCTCTCTCCCTATTTCCCTCCCTTTCCTTCTT
TTTCACCTATTCCCTTCCTTCCTCTCTTTCCTCTTCCCACCCTTTTCCCC
TACCTCCTTCTTTTCCTTTCTCCTATCACTTTCCCTTCATCCCCTTCTCT
TTTTCTTCCTTTCCTCCTCATCCATCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_m06.g1 MSMg01no437_m06.g1 CHROMAT_FILE:
MSMg01no437_m06.g1 PHD_FILE: MSMg01no437_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:16 2005
         (450 letters)



>mm_chr11_15056066_15056918
          Length = 853

 Score =  853 bits (441), Expect = 0.0
 Identities = 449/453 (99%), Gaps = 3/453 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagcaattgtacaattttgtgcaattttggagatttgaatacttcaagaaattgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagcaattgtacaattttgtgcaattttggagatttgaatacttcaagaaattgtgca 260

                                                                       
Query: 61  ttactggaactgcattatccagaaaataaaccaactataagtgaagacattttagacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactggaactgcattatccagaaaataaaccaactataagtgaagacattttagacact 320

                                                                       
Query: 121 caacataattgtacaggtaataccaaaaatggcagtgttttaaaaattattttctctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacataattgtacaggtaataccaaaaatggcagtgttttaaaaattattttctctata 380

                                                                       
Query: 181 aataaaactcttagtttcattttatagacacacacaattaaaatcagtagggaattttaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 aataaaactcttagtttcattttatagacacacacaattcaaatcagtagggaattttaa 440

                                                                       
Query: 241 tagaatggtttctcatgactcatcgcttctcccttcatgatttacacaatttagtgtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaatggtttctcatgactcatcgcttctcccttcatgatttacacaatttagtgtttt 500

                                                                       
Query: 301 ttttt---aagagttttatagtcaacatctcatcaattatccaaatatgacctggtatac 357
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttttaagagttttatagtcaacatctcatcaattatccaaatatgacctggtatac 560

                                                                       
Query: 358 agtatgtagtccagggggaagtcatagaaatcctacttcttcagcatcctacatattcag 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtatgtagtccagggggaagtcatagaaatcctacttcttcagcatcctacatattcag 620

                                            
Query: 418 gctgtatgtgtgattctcagtatatttacggtc 450
           |||||||||||||||||||||||||||||||||
Sbjct: 621 gctgtatgtgtgattctcagtatatttacggtc 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 853
Length adjustment: 10
Effective length of query: 440
Effective length of database: 843
Effective search space:   370920
Effective search space used:   370920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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