BAC Information

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BAC

Clone NameMSMg01-437N10
Chromosome11 (Build37)
Map Location 49,070,451 - 49,070,877
singlet/doubletsinglet
Overlap geneMgat1
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62
Downstream geneOlfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437N10.T7 (MSMg01no437_n10.b1)MSMg01-437N10.TJ (MSMg01no437_n10.g1)
ACCAG528575AG528576
length783785
length of high quality
(start - end)		433 (51 - 483)427 (82 - 508)
definitionCHROMAT_FILE: MSMg01no437_n10.b1 PHD_FILE: MSMg01no437_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:22 2005CHROMAT_FILE: MSMg01no437_n10.g1 PHD_FILE: MSMg01no437_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTC
ATGAGGTCCCATTTGCCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTATTCAGGCATTTTCCCCCTGTGCCCATATCTTCGAGGCTTTTCCCTA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTTG
CATTCTTCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAA
TGTTGTCTTTTTTCCACTGCATAGTTTTAGCTCCCTTGGCCCAGATCAAG
TGACCATAAGGATGTGGGTTCCTTTCCTGTCTTCCATTTTTTTCCATTGG
GCCCACTGGTTTGGTGGTATACAATTACCTGTGCGTTTTTTTACCATACG
CTCTTTCCAAAGTTTATTTCTCTCCATGTTTTTCTCCCCCAAAGTTTTTT
TCTTCTTAATAGAATTTTGGTTTCCCTACTTTTCTTCTTCCCCTTTCATA
TTCATTTTTCTCCCTCTCTTTCCTAACAATTCT

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAAAGTTTCAACATTG
ATCACATTCTGTAGGGGACTGAAGGAGACCTGGCAACTGGTGCATCTCTC
ATCTCTCAAGAAAGTAGTGTAATGACACAGCTGAGAGGAAGTGGCTCAAG
GTTTCTGCTACATGGCATTCTGGATTGTGTGGGTGCTTGGTTTTAGGAGG
AAATCTAATGGCCAGGAGCTTGGAAAGACAGGACCCAGATCAGAGGGCTG
CAGAGCTGGGATTCAAAGTTTTAGAAAGGATAGAGAATAGGGTAAGTACA
GAGCAAGGCTGATTCTTGTGTCCTGGCCCTTCCAAGAGCCTGGCAGGAGC
AGGCATATGATTGAGGGGTTCCAGGCAAACCTGCTCATCTCTGCTTCCCT
TACTGCATGTCCCCACCTGGGGCAATACTAATGGATGAAGTCACTCGGAA
ATGGACTCCATGTTGCCTTATTTTATTGCTTATGAAACTTTATTTTGGAA
AAACAAAGTTTATTGAATAAAAATGGCCCCTTCATAGTGACCTACAGGGT
ATTATTCCTTTGTTATTAATGTCTTGCTCCCCTTCCCTCCGTGGGAGCTA
ATGATAAATTTTGGCTTCGAAACACCTGATGTGCTCTCTTCCCAAGACCT
TTGCCCTCTAATATTCTCTTGCGGCACCTTTCCCCTCTCAATTTTTCTCC
TCCTCTTTTTTATCCCTCCTCGTTTTTACCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_n10.g1 MSMg01no437_n10.g1 CHROMAT_FILE:
MSMg01no437_n10.g1 PHD_FILE: MSMg01no437_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:22 2005
         (427 letters)



>mm_chr11_49070251_49071077
          Length = 827

 Score =  803 bits (415), Expect = 0.0
 Identities = 424/427 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcaaagtttcaacattgatcacattctgtaggggactgaaggagacctggcaactggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcaaagtttcaacattgatcacattctgtaggggactgaaggagacctggcaactggt 260

                                                                       
Query: 61  gcatctctcatctctcaagaaagtagtgtaatgacacagctgagaggaagtggctcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatctctcatctctcaagaaagtagtgtaatgacacagctgagaggaagtggctcaagg 320

                                                                       
Query: 121 tttctgctacatggcattctggattgtgtgggtgcttggttttaggaggaaatctaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctgctacatggcattctggattgtgtgggtgcttggttttaggaggaaatctaatgg 380

                                                                       
Query: 181 ccaggagcttggaaagacaggacccagatcagagggctgcagagctgggattcaaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggagcttggaaagacaggacccagatcagagggctgcagagctgggattcaaagttt 440

                                                                       
Query: 241 tagaaaggatagagaatagggtaagtacagagcaaggctgattcttgtgtcctggccctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaaggatagagaatagggtaagtacagagcaaggctgattcttgtgtcctggccctt 500

                                                                       
Query: 301 ccaagagcctggcaggagcaggcatatgattgaggggttccaggcaaacctgctcatctc 360
           |||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 501 ccaagagcctagcaggagcaggcatatgattgaggggttccaggtaaatctgctcatctc 560

                                                                       
Query: 361 tgcttcccttactgcatgtccccacctggggcaatactaatggatgaagtcactcggaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttcccttactgcatgtccccacctggggcaatactaatggatgaagtcactcggaaa 620

                  
Query: 421 tggactc 427
           |||||||
Sbjct: 621 tggactc 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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