BAC Information

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BAC

Clone NameMSMg01-437N12
Chromosome11 (Build37)
Map Location 42,060,974 - 42,061,490
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039285, Hspd1, LOC100039292, Gabrg2, Gabra1
Downstream geneGabra6, Gabrb2, Atp10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437N12.T7 (MSMg01no437_n12.b1)MSMg01-437N12.TJ (MSMg01no437_n12.g1)
ACCAG528579AG528580
length772769
length of high quality
(start - end)		522 (51 - 572)339 (79 - 417)
definitionCHROMAT_FILE: MSMg01no437_n12.b1 PHD_FILE: MSMg01no437_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:22 2005CHROMAT_FILE: MSMg01no437_n12.g1 PHD_FILE: MSMg01no437_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATCTGGCTTTATCTCCCTCTAAGCAGTTTTCCTAACAAA
ATTAATTCATGAAGTATGGAAGAGAACTCTCTCTTTGGCAAGAATTTTTA
ATCTCTAGTTTCACATAGAACCTCTCAACTAAAACTTAAAATTGCCTCAC
TGGGCAGTTTTGTTTTCGATTGTTGGCATTTAGCTCCACCTTTATAAATA
AAAGTCTTTTAAGTGTTTTTCCCTTAGTGTTAACAAGGACAATAAGCTCA
GCTTATTCTCCTAATTGTCCATTTAACAACATACATATATTAGTCCCATG
TCTTATTCCACTTACTATTTTTCTTCAAAGGTAATCTCTAAATATGTGGA
GTGATTATTTTCCTAGAAATTTTACTATTATTAATAATAAAGACACCAAA
GGTCTTTCCACACACAATTGCAAACGTACTTTAGCTTGCTTTGATGAATT
ATACCATTTTCTTTTGACTAACGTCTAAACTGAGCCTTAATATATGCTTC
AGTATATATGACTATCAGAATCGCCCTTATCACCTTCAGTTACAACTACT
CCCTGGAAAACTCACTGCTTGGGAATTTCCTTCCCGACACTCCCTAAGTA
AATAAACCATGGGTACCTTGGCGAATATCCCCAAAGGGAAATTTAACTTT
GCAAAGAAATATGAATGGGCAGAAAACCCTGGCCCACCTGGCCCCATAAA
ATTGTGTATTCCCCCGGGGAAT

NCCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTAT
CATGAATGGGTGTTTGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTG
ATGGATTTTCATATATTAAACCATCCCTGCATCCCTGGAATAAAACCTAC
TTGGTCAGAATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCAA
GAATTTTATTGAGGATTTTTGCTTCTTTATTCATAAGAGAAATTGGTCTG
AAGTTCTCTATCTTTGTTGAGTCTTTCTGTGGTTTAGGTATCAGAGTAAT
AGTGGCTTCATAAAATGACCTGGGTAGAGTACTTTCTACTTCTATCTTGT
GAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCCTTGAAGGTCTGATAG
AATTCTGCACTATACCTGTCTGGTCCTGTTCTTTTTTTGCCTGCTCTATT
ATTTATTTCTGTCTCCCATTTCTCTATCGTATTCGCCTTTTGTTTTTATT
TGTAACTCCTTTTTCCCACCCACTTTGCCTTACTGTAATTTGTCCAACTA
CTTTTCCCTCTTTCTTTTCTTCTTCCCTTTTCTTCCTTTATATCCCTTTC
TTTTCCTCCCCTCTCAACTTCTTTTTTTCTCCTTCTCCCTTTTTCCCCCC
CCCTCTCTTTTCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_n12.b1 MSMg01no437_n12.b1 CHROMAT_FILE:
MSMg01no437_n12.b1 PHD_FILE: MSMg01no437_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:22 2005
         (522 letters)



>mm_chr11_42060770_42061691
          Length = 922

 Score =  969 bits (501), Expect = 0.0
 Identities = 513/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatctggctttatctccctctaagcagttttcctaacaaaattaattcatgaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatctggctttatctccctctaagcagttttcctaacaaaattaattcatgaag 264

                                                                       
Query: 65  tatggaagagaactctctctttggcaagaatttttaatctctagtttcacatagaacctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatggaagagaactctctctttggcaagaatttttaatctctagtttcacatagaacctc 324

                                                                       
Query: 125 tcaactaaaacttaaaattgcctcactgggcagttttgttttcgattgttggcatttagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaactaaaacttaaaattgcctcactgggcagttttgttttcgattgttggcatttagc 384

                                                                       
Query: 185 tccacctttataaataaaagtcttttaagtgtttttcccttagtgttaacaaggacaata 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 tccacctttataaataaaagtcttttatgtgtttttcccttagtgttaacaaggacaata 444

                                                                       
Query: 245 agctcagcttattctcctaattgtccatttaacaacatacatatattagtcccatgtctt 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 agctcagcttattctcctaattgtccatttaagaacatacatatattagtcccatgtctt 504

                                                                       
Query: 305 attccacttactatttttcttcaaaggtaatctctaaatatgtggagtgattattttcct 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 505 attccacttactatttttcttcaaaggtaatctctaaatttgtggagtgattactttcct 564

                                                                       
Query: 365 agaaattttactattattaataataaagacaccaaaggtctttccacacacaattgcaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaattttactattattaataataaagacaccaaaggtctttccacacacaattgcaaa 624

                                                                       
Query: 425 cgtactttagcttgctttgatgaattataccattttcttttgactaacgtctaaactgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgtactttagcttgctttgatgaattataccattttcttttgactaacgtctaaactgag 684

                                                
Query: 485 ccttaatatatgcttcagtatatatgactatcagaat 521
           |||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccttaatatatgcttcagtatatatgactatcagaat 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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